BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950433

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G57480.1 | Symbols:  | P-loop containing nucleoside triphosp...   494    3e-139


> AT5G57480.1 | Symbols:  | P-loop containing nucleoside triphosphate 
hydrolases superfamily protein | chr5:23279406-23280968 
REVERSE LENGTH=1563
Length=1563

 Score =  494 bits (267),  Expect = 3e-139
 Identities = 298/313 (95%), Gaps = 2/313 (1%)
 Strand=Plus/Plus

Query  1     ACGACGACGTTTTAAAGGAGATGGAGA-GAGTGGTGGAGAAGGCTGAGATGACGCCTGCT  59
             ||| ||||||||| ||||||||||||| | || |||||||||||||||||||| ||||||
Sbjct  1250  ACGGCGACGTTTTGAAGGAGATGGAGATG-GTTGTGGAGAAGGCTGAGATGACTCCTGCT  1308

Query  60    GATGTAAGCGAGGCTTTGATTAAGAATAGGAGGGATAAAGAGAAGGCGATTAGGGAGTTG  119
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1309  GATGTAAGTGAGGCTTTGATTAAGAATAGGAGGGATAAAGAGAAGGCGATTAGGGAGTTG  1368

Query  120   TTGGAGGATTTGAAAAGTAGAGGGGAGAGAAATGTGAAAGATGGGAAATTGAGGGGTGGA  179
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1369  TTGGAGGATTTAAAAAGTAGAGGGGAGAGAAATGTGAAAGATGGGAAATTGAGGGGTGGA  1428

Query  180   AGTGGGATTTTGACTGAGTTGGAAGTTGTGGAGGAACAAGAGAAGAGGGCTATAGATAGT  239
             ||||||| ||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct  1429  AGTGGGAATTTGACTGAATTGGAAGTTGTTGAGGAACAAGAGAAGAGGGCAATAGATAGT  1488

Query  240   CAAAATGAAGATGAGGATCATGATGAAGAAGAAATTGAGCTTGAGGATAACATATGTAAG  299
             |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct  1489  CAAAATGAAGATGAGGATCATGATGAAGAAGAGATTGAGCTTGAGGATAACATTTGTAAG  1548

Query  300   ACAAGAGAAGATT  312
             || ||||||||||
Sbjct  1549  ACTAGAGAAGATT  1561



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15583002190


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5