BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950440
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57500.1 | Symbols: | Galactosyltransferase family protein ... 1620 0.0
> AT5G57500.1 | Symbols: | Galactosyltransferase family protein
| chr5:23286237-23287571 REVERSE LENGTH=1172
Length=1172
Score = 1620 bits (877), Expect = 0.0
Identities = 957/997 (96%), Gaps = 0/997 (0%)
Strand=Plus/Plus
Query 1 GCTTTCATTGAACAAGGAAGATGAAATCTTCTCCAAGATCAGAAGGAAGAAAGTTCATAA 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 27 GCTTTCATTGAACAAGGAATATGAAATCTTCTCCAAGATCAGAAGGAAGAAAGTTCATTA 86
Query 61 TCCCTTCTTTCTTCTTCATCATAGCTCTTTGTGTATTAGCTTTCATCAACGAGATTAGAT 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 87 TCCCTTCTTTCTTCTTCATCATAGCTCTTTGTGTACTAGCTTTCATCAACGAGATCAGAT 146
Query 121 TCGATAGCTTATTAAGTTTTGGAAGATGTGCTTTGTCAAATGTTCCGATGAATAACGGTT 180
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 147 TCGATAGCTTATTGAGTTTTGGAAGATGTGCTTTGTCAAATGTTCCTATGAATAATGGTT 206
Query 181 CATCGGAGACTCCATTGTTGTCTTCTTCTTCTGTTGATGATGAGATTAGGATTCTTATTG 240
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 207 CATCAGAGACTCCATTGTTGTCTTCTTCTCCTGTTGATGATGAGATTAGGATTCTTATTG 266
Query 241 GAATCCTTACACTTCCTGATCAGTATCCACGTCGGCATTTTCTCCGGATGATCTACGGGA 300
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 267 GAATCCTTACACTTCCTGATCAGTATTCACGTCGCCATTTTCTCCGGATGATCTACGGGA 326
Query 301 CACAGAATGTTCCGGACGGTGTTAAGGTTGATGTGAAGTTTGTGTTCTGTAATTTAACTA 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 327 CACAAAATGTTCCGGACGGTGTTAAGGTTGATGTGAAGTTTGTGTTCTGTAATTTGACTA 386
Query 361 AAGAAGATCAAAAAGTGCTCGTGGCTTTGGAGATTATGCGTTATGATGACATCATTATAC 420
||||||| || |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 387 AAGAAGACCAGAAAGTGCTTGTTGCTTTGGAGATTATGCGTTATGATGACATCATTATAC 446
Query 421 TCAATTGCAATGAGAATATGAACAAAGGCAAGACTTACACATACTTCTCAAGCTTACCAG 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 TCAACTGCAATGAGAATATGAACAAAGGCAAGACTTACACATACTTCTCAAGCTTACCAG 506
Query 481 ACATATTCAATGAGACGGATGCACCAAACCCGCCGTATCATTACGTAATGAAAGCCGACG 540
|||||||||||||||| ||||||| ||| || ||||| ||||||||||||||||||||||
Sbjct 507 ACATATTCAATGAGACCGATGCACAAAAACCACCGTACCATTACGTAATGAAAGCCGACG 566
Query 541 ACGACACATACATAAGACTAGAAAGTCTCGTTGCATCTTTAAGACCACTCGCTCGAGAAG 600
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 567 ACGACACATACATAAGACTAGAAAGTCTCGTTGCATCTTTGAGACCACTCCCTCGAGAAG 626
Query 601 ATCTTTACTACGGCTATGTAATTCCATGTCCAAGCATGGACCCATTTGTTCATTACATGT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 ATCTTTACTACGGCTATGTAATTCCATGTCCAAGCATGGACCCATTTGTTCATTACATGT 686
Query 661 CAGGAATGGGTTACTTAGTGTCATGGGACATAGCGGTTTGGCTCAAAGACTCGGAAATTC 720
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 687 CAGGAATGGGTTACTTAGTGTCATGGGATATTGCGGTTTGGCTCAAAGACTCGGAAATTC 746
Query 721 CCAAGAAACATCTAGAAGGTCCTGAAGACAAAGTGTTTGGCGATTGGATTCGAGAAGGAA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 CCAAGAAACATCTAGAAGGTCCTGAAGACAAAGTGTTTGGCGATTGGATTCGAGAAGGAA 806
Query 781 GACGAGGAAAAAACCGGTTTAACGCTAAATGGTCGATGTATAACTTCCCCGAGCCACCAA 840
|||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||| |
Sbjct 807 GACGAGGAAAAAACCGGTTTAACGCTAAGTGGTCCATGTATAATTTCCCTGAGCCACCGA 866
Query 841 CTCGATGCACACATGAGCTTTGGCCAGACACTATCGCGGTTCATTTGTTGAAGAACCAAG 900
|| ||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 867 CTAGATGCACACATGAGCTTTGGCCAGACACTATTGCCGTTCATTTGTTAAAGAACCAAG 926
Query 901 AGAAGTGGATACGAACATTGAACTATTTCAATGTTACTAGCAATCTCAAGCCTTCAAAAT 960
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 927 AGAAGTGGATACGTACATTGAACTATTTCAATGTTACTAGCAATCTCAAGCCTTCTAAAC 986
Query 961 TATACCACATACCGTAGATAGTCTTTTCGTTTGCTTT 997
||||||||||||||||||||||||||| |||||||||
Sbjct 987 TATACCACATACCGTAGATAGTCTTTTTGTTTGCTTT 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48827590884
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5