BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950441

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G57510.1 | Symbols:  | unknown protein; Has 27 Blast hits to...   649    0.0  


> AT5G57510.1 | Symbols:  | unknown protein; Has 27 Blast hits 
to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:23289164-23289556 REVERSE 
LENGTH=393
Length=393

 Score =  649 bits (351),  Expect = 0.0
 Identities = 379/393 (96%), Gaps = 0/393 (0%)
 Strand=Plus/Plus

Query  21   ATGGCAAAGAGCAAAGACCGTTCGCTACTAAACCGGTTGAGACAAGCCGTGAATAAAGTA  80
            ||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGACAAAGAGCAAAGACGGTTCGCTACTAAACCGGTTGAGACAAGCAGTGAATAAAGTA  60

Query  81   AGATTCGTGTTAAGTTTCAAGATAAACAGCCTCTGGGATCTCGTACCGATGCTTGGTTCT  140
            | |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct  61   AAATTCGTGTTAAGTTTCAAGATAAATAGCCTCTGGGGTCTCGTACCGATGCTTGGTTCT  120

Query  141  TCCTCTTCTTCTTCGTCTCTTCGGTTAAGTTTCAACGATAGACCCGGTTTAACAGCGGCT  200
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  121  TCCTCTTCTTCTTCGTCTCTTCGGTTAAGTTTCAACGATAGACCTGGTTTAACAGCGGCT  180

Query  201  TTTGCAGAGAATGAACCGGACTTAAACGGTTCTTCAAGGGGAGCGTTGTATAGAACCGTG  260
            ||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct  181  TTTACAGAGAATGAACCGGACTCAACCGGTTCTTCAAGGGGAGCGTTGTATAGAACCGTG  240

Query  261  AGTTATGATCAATCTTCAGATGAAGACATAGACAACAAAGCTGAGATGTTCATAGCTAAC  320
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct  241  AGTTATGATCAATCTTCAGATGAAGACATTGACAACAAAGCTGAGATGTTCATAGCTAAT  300

Query  321  TTCTACAGACAGCTTAAGATTGAGAGACAAATCTCTTTGGAACTTAAATATTTTCAGGGT  380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct  301  TTCTACAGACAGCTTAAGATTGAGAGACAAATCTCTTTGGAACTTAAATATTGCCAGGGT  360

Query  381  AATAATCAGAGTTTCAACTACAGATCGCCTTAA  413
            |||||||||||||||||||||||||||||||||
Sbjct  361  AATAATCAGAGTTTCAACTACAGATCGCCTTAA  393



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20559509341


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5