BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950444
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57560.1 | Symbols: TCH4, XTH22 | Xyloglucan endotransglucos... 1437 0.0
AT2G18800.1 | Symbols: ATXTH21, XTH21 | xyloglucan endotransglu... 222 4e-57
AT2G12660.1 | Symbols: | pseudogene, xyloglucan endotransglyco... 128 9e-29
> AT5G57560.1 | Symbols: TCH4, XTH22 | Xyloglucan endotransglucosylase/hydrolase
family protein | chr5:23307130-23308282 REVERSE
LENGTH=1068
Length=1068
Score = 1437 bits (778), Expect = 0.0
Identities = 855/891 (96%), Gaps = 10/891 (1%)
Strand=Plus/Plus
Query 8 ACAATCTCTAAAAAATGTCAATCACTTACTTACTTCCTCTGTTTCTTTCTC---TCATCA 64
|||||||||| |||||| | ||||||||||| ||||||||||||||||||| ||||||
Sbjct 34 ACAATCTCTAGAAAATGGCGATCACTTACTTGCTTCCTCTGTTTCTTTCTCTTATCATCA 93
Query 65 TCTCCTCTGTTTCAGCTAATTTCCAAAGAGACGTTGAGATCACTTGGGGTGATGGTCGTG 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 CCTCCTCTGTTTCAGCTAATTTCCAAAGAGACGTTGAGATCACTTGGGGTGATGGTCGTG 153
Query 125 GACAGATCAAGAACAATGGAGAGCTTCTTACTTTATCTCTAGATAAATCCTCTGGTTCTG 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 154 GACAGATCAAGAACAATGGAGAGCTTCTCACTTTATCTCTAGATAAATCCTCTGGTTCTG 213
Query 185 GATTCCAATCCAAAAACGAATACTTGTTCGGTAAAATCTCCATGCAAATGAAGCTTGTCC 244
||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||
Sbjct 214 GATTCCAATCCAAAAACGAGTACTTGTTTGGTAAAGTCTCCATGCAAATGAAGCTTGTCC 273
Query 245 CTGGAAACTCCGCAGGAACCGTCACAACACTCTACTTGAAATCACCTGGAACAACATGGG 304
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 274 CTGGAAACTCCGCAGGAACAGTCACAACACTTTACTTGAAATCACCTGGAACAACATGGG 333
Query 305 ACGAGATAGATTTCGAGTTTTT-GGGTAATTCAAGTGGAGATCCTTACACACTTCACACA 363
|||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 334 ACGAGATAGATTTCGAGTTTTTAGGG-AATTCAAGTGGAGAACCTTACACACTTCACACA 392
Query 364 AATGTCTACACGCAAGGCAAAGGAGACAAAGAACAACAATTCAAACTCTGGTTTGATCCA 423
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 AATGTCTACACACAAGGCAAAGGAGACAAAGAACAACAATTCAAACTCTGGTTTGATCCA 452
Query 424 ACAGCTGATTTCCACACTTACACCATTCTCTGGAACCCACAAAGAATCATCTTCACCGTC 483
|||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 453 ACAGCTAATTTCCACACTTACACTATTCTCTGGAACCCACAAAGAATCATTTTCACCGTC 512
Query 484 GATGGAACTCCAATTAGAGAATTCAAGAACATGGAGTCTCTAGGCACTCTGTTTCCCAAG 543
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 GATGGAACTCCGATCAGAGAATTCAAGAACATGGAGTCTCTAGGCACTCTGTTTCCCAAG 572
Query 544 AACAAACCAATGAGGATGTACTCTAGTCTTTGGAACGCTGATGATTGGGCAACGAGAGGT 603
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 573 AACAAACCAATGAGAATGTACTCGAGTCTTTGGAACGCTGATGATTGGGCAACGAGAGGT 632
Query 604 GGTTTGGTCAAAACCGATTGGTCTAAAGCTCCTTTCACTGCTTCCTACCGTGGCTTTAAA 663
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 633 GGTTTGGTCAAAACCGATTGGTCTAAAGCTCCTTTCACTGCTTCTTACCGTGGCTTTCAA 692
Query 664 CAAGAAGCTTGTGTTTGGTCAAACGGCAAGTCTTCTTGTCCTAATGCCTCCAAACAGGGG 723
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 693 CAAGAAGCTTGTGTTTGGTCAAACGGCAAGTCTTCTTGTCCTAATGCCTCGAAACAGGGG 752
Query 724 AC--C-ACTGGCTCGTGGTTGTCACAAGAGCTTGACTCAACGGCTCAACAAAGGATGAGA 780
|| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 753 ACTACTACTGGCTCGTGGTTGTCACAAGAGCTTGACTCAACAGCTCAACAAAGGATGAGA 812
Query 781 TGGGTGCAGAGGAACTACATGATCTATAATTATTGTACGGATGCAAAGAGGTTCCCTCAA 840
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 813 TGGGTGCAGAGGAACTACATGATCTATAATTATTGTACGGATGCGAAGAGGTTCCCTCAA 872
Query 841 GGTCTTCCTAAAGAGTGCTTAGCTGCATAGAGAG--TAAAGCGTTGAGAGA 889
|||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 873 GGTCTTCCTAAAGAGTGCTTAGCTGCATAGAGAGAGTAAAGAGTTGAGAGA 923
> AT2G18800.1 | Symbols: ATXTH21, XTH21 | xyloglucan endotransglucosylase/hydrolase
21 | chr2:8144912-8146265 FORWARD LENGTH=953
Length=953
Score = 222 bits (120), Expect = 4e-57
Identities = 405/539 (75%), Gaps = 33/539 (6%)
Strand=Plus/Plus
Query 93 AGACGTTGAGATCACTTGGGGTGATGGTCGTGGACAGATCAAGAACAATGGAGA-GCTTC 151
|||| |||| || || |||||||||||| | ||| | || ||||||||| | ||||
Sbjct 125 AGACATTGACATAACCTGGGGTGATGGTAGAGGAAATATTTTGAACAATGG-TACTCTTC 183
Query 152 TTACTTTATCTCTAGATAAATCCTCTGGTTCTGGATTCCAATCCAAAAACGAATACTTGT 211
| | | | ||| ||| |||| || ||||| || || ||||| ||| ||| || ||||
Sbjct 184 TAAATCTCGGTCTTGATCAATCTTCGGGTTCAGGGTTTCAATCGAAAGCCGAGTATTTGT 243
Query 212 TCGGTAAAA-TCT-CCATGCAAATGAAGCTTGTCCCTGGAAACTCCGCAGGAACCGTCAC 269
||| |||| | | ||||| || || |||||||| ||||| || || || ||||| ||
Sbjct 244 ACGG-AAAAGT-TGATATGCAGATCAAACTTGTCCCGGGAAATTCAGCCGGGACCGTGAC 301
Query 270 AACAC-TCTACTTGAAATCACCTGGAACAACATGGGACGAGATAGATTTCGAGTTTTTGG 328
|| | |||||||||| || | ||| ||||||||||||||||||||||||||||||||
Sbjct 302 CAC-CTTCTACTTGAAGTCTCAAGGATTAACATGGGACGAGATAGATTTCGAGTTTTTGG 360
Query 329 GTAAT-TCAAGTGGAGATCCTTACACACTTCACACAAATGTCTACACGCAAGGCAAAGGA 387
| ||| | | |||||||||| |||| ||||||| ||||| ||||| |||||||| ||
Sbjct 361 GGAATGTTA-GTGGAGATCCATACATTGTTCACACTAATGTTTACACTCAAGGCAAGGGT 419
Query 388 GACAAAGAACAACAATTCAAACTCTGGTTTGATCCAACAGCTGATTTCCACA-CTTACAC 446
|| | ||| ||||||||| | || ||||| ||||||||||| | ||||||| || || |
Sbjct 420 GATAGAGAGCAACAATTCTACCTTTGGTTCGATCCAACAGCCGCGTTCCACAACT-ACTC 478
Query 447 CATTCTCTGGAACCC-A--CAAAGAATCATCT-TCACCGTCGATGG-AACTCCAATTAGA 501
||||| ||||| || | || | | | ||| | | | ||||| || ||||| |||
Sbjct 479 TATTCTATGGAATCCGAGTCACATAGTGTTCTAT-AT--T-GATGGGAAG-CCAATCAGA 533
Query 502 GAATTCAAGAACATGGA-GTCTCTAGGCACTCTG--TT-TCCCAAGAACAAACCAATGAG 557
|||||||||||| |||| || | | || | || || ||| |||||| |||| |||||
Sbjct 534 GAATTCAAGAACTTGGAAGTAT-TGGG---TGTGGCTTATCCAAAGAACCAACCCATGAG 589
Query 558 GATGTACTCTA-GTCTTTGGAACGCTGATGATTGGGCAACGAGAGGTGGTTTGGTCAAA 615
||||| | | |||| |||||||| || |||||||| ||||| || || |||| |||
Sbjct 590 AATGTA-TGGAAGTCTATGGAACGCAGACGATTGGGCCACGAGGGGAGGGCTGGT-AAA 646
> AT2G12660.1 | Symbols: | pseudogene, xyloglucan endotransglycosylase,
blastp match of 82% identity and 5.9e-44 P-value
to GP|19911573|dbj|BAB86890.1||AB083025 syringolide-induced
protein 19-1-5 {Glycine max} | chr2:5181465-5182059 REVERSE
LENGTH=595
Length=595
Score = 128 bits (69), Expect = 9e-29
Identities = 112/133 (84%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 297 AACATGGGACGAGATAGATTTCGAGTTTTTGGGTAAT-TCAAGTGGAGATCCTTACACAC 355
||||||||||||||||||||||||||||||||| ||| | | |||||||||| ||||
Sbjct 432 AACATGGGACGAGATAGATTTCGAGTTTTTGGGGAATGTTA-GTGGAGATCCATACATTG 490
Query 356 TTCACACAAATGTCTACACGCAAGGCAAAGGAGACAAAGAACAACAATTCAAACTCTGGT 415
||||||| ||||| ||||| |||||||| || || | ||| || |||||| | || ||||
Sbjct 491 TTCACACTAATGTTTACACTCAAGGCAAGGGTGATAGAGAGCAGCAATTCTACCTTTGGT 550
Query 416 TTGATCCAACAGC 428
| |||||||||||
Sbjct 551 TCGATCCAACAGC 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43452537155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5