BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950447
Length=1126
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55440.1 | Symbols: | Protein of unknown function (DUF295) ... 928 0.0
> AT5G55440.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:22465693-22467209 FORWARD LENGTH=1343
Length=1343
Score = 928 bits (502), Expect = 0.0
Identities = 884/1066 (83%), Gaps = 35/1066 (3%)
Strand=Plus/Plus
Query 17 aaaaaTGGCTCTGTTTC-TCAGCCGCGTCTTGACGCTCTCTGGACGCAGGGACAATGCTC 75
||| ||||||||| ||| ||||||| ||| | ||| |||||||||||| |||||||||
Sbjct 22 AAATATGGCTCTG-TTCTTCAGCCGAATCTCAAAGCTTTCTGGACGCAGGAACAATGCTC 80
Query 76 GTTTCTTCTCATCATTGCCGCAGTTCCCGTATTTGCTAATGGGCGGTAAGAAGTTGGGAG 135
||||||||||||||||||| | || ||| | ||| | || | |||||||||| |||
Sbjct 81 GTTTCTTCTCATCATTGCCTCCGTCCCCATGCTTGGTGCTGACCACTAAGAAGTTGCGAG 140
Query 136 AGTCTCC---GGAGGGTAAAATCAG-GAAGCACAGGTTATTTGATCCGACAACTGAAGAG 191
|||||| |||||| |||| | | | |||| |||||| || ||| | || ||| |
Sbjct 141 GGTCTCCAGAGGAGGGCCTAATC-GTGCATCACAAGTTATTCGAACCGGCTACGGAAAAA 199
Query 192 ACAGTGTATAGCAAAGAGAAGACGAT-TCCC-AAGAAGC-TCAATGG-GCAACCTC-TCG 246
| |||||| |||| ||||||| | | |||| ||| ||| || |||| || || | ||
Sbjct 200 AAAGTGTACGGCAATGAGAAGAAG-TATCCCAAAG-AGCTTC-ATGGAGC-TCCGCTTC- 254
Query 247 TGGGAGCATC-ACAAGGTTGGATAGCTTCTCTGGAGAACAAAGACCTTACCGTGCATATC 305
|||||||||| | |||||||| | |||| | | || | |||||| ||| |||||| ||
Sbjct 255 TGGGAGCATCGA-AAGGTTGGGTCGCTTTTTTCAAGGAGAAAGACATTAGTGTGCATCTC 313
Query 306 ACGGATGTGTACAAGCCATG-GCTCTCATCTTCAAAAGTAATATCATTGCC-T---TCAA 360
|||||| |||||||||| || | |||||||| ||| ||| |||||||| || | ||||
Sbjct 314 ACGGATCTGTACAAGCCTTGTG-TCTCATCTCCAAGAGTCATATCATTACCATCACTCAA 372
Query 361 --TTGGGTTTAAACCCTCAACACATGCAAC-GAGAGTGTCTTTCTCTTCTTCTGATCCTG 417
| | | ||||||| |||| ||||| || || ||||| | ||||||| ||||||||||
Sbjct 373 GCTCGACTATAAACCCGCAACTCATGCCACGGA-AGTGTGTCTCTCTTCGTCTGATCCTG 431
Query 418 TCCAAGACGACTTTTCCGTGGCTGCAAAGTTTGACGAGTATCGGC-TAAGTGTATGTAGG 476
|||||||||||| || ||||||||||||||| | || |||| | ||||||||||||||
Sbjct 432 TCCAAGACGACTATTACGTGGCTGCAAAGTTCAATGACTATC-ACGTAAGTGTATGTAGG 490
Query 477 CCTTATTGGGACTCTAAGTGGACTCACATCGAGACAGCTTATTCTCTTTTACCAGCCTCT 536
||| |||||||||| | |||||||||| |||||| | ||| ||||||||||||||||
Sbjct 491 CCTCGTTGGGACTCTGACTGGACTCACAACGAGACCGGTTACAGTCTTTTACCAGCCTCT 550
Query 537 GATCTCATGTATTCAAAGAGAGACAAAGTCTTTTACTTTACCAGTTTTAAGGGTAACTAC 596
|| |||||||| || ||||||||||||| ||| ||||||| |||||||||||| ||||
Sbjct 551 GAGCTCATGTACTCCAAGAGAGACAAAGCCTTCCACTTTACGAGTTTTAAGGGTCTCTAC 610
Query 597 ATGGCTTCGT-TGGATCTCACCAACAACTTCGAGCCCGAGTATCAACACTTACGCCTTCG 655
|||| ||| | || |||||| || || |||| | ||||| || | |||||||| |
Sbjct 611 ATGGGTTC-TCTGTATCTCAGTAAAAAAGACGAGATCAAGTATAAAGAGATACGCCTTAG 669
Query 656 AAACCTGCCTAAGATCCCAGAGGTAGGTTGGGAGATGTTGGATAAATGTTTCATGACCCA 715
||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |
Sbjct 670 AAACCTGCCTAAGATTCCAGAGGCAGGTTGGGAGATGTTGGATAAATGTTCCATGACCAA 729
Query 716 CCACTTAGTGGAGTCTCCCTCTGGTGAACTTTTCTTCATCAAGTGGTACACACAGTGCAT 775
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 730 TCACTTAGTGGATTCTCCCTCTGGTGAACTTTTCTTCATCAAGTGGTACACACAGTGTAT 789
Query 776 TCACAAAGAGGACAAAGATGGGGATTTGGAATTTATCCACAGCAATACCAAGCGGTTCAT 835
||||||||||||| |||||||||||||||||| | |||||||||| || |||||||||||
Sbjct 790 TCACAAAGAGGACGAAGATGGGGATTTGGAATGTCTCCACAGCAAAACTAAGCGGTTCAT 849
Query 836 GATCTTTAGGCAAGATGGGATGAGCAAAGACTTTTGTTACACGGAAGATATTGGAGATCT 895
| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 850 GGTCTTTAGGCAAGATGGGATGAGCAAAGACTTTGGTTACACTGAAGATATTGGAGATCT 909
Query 896 TTGCATCTTCCTTAGTAAGAGTGAAGCCTTCTGTCTCTCGGCAAGCATGTACCCTAGG-C 954
|||||||||||| | |||||||||||||||||| || ||||||| ||||||| ||| |
Sbjct 910 CTGCATCTTCCTTGGCAAGAGTGAAGCCTTCTGTGTCACGGCAAGTTTGTACCC-AGGGC 968
Query 955 TCAAACCTAACTCCATCTATTACATTGGCCCTAGACTTGGTTCTTACAATCTGGCTTCTG 1014
||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||
Sbjct 969 TCAAACCTAACTCCATCTATTACCTTGGCCCTAGATTTGGTTCTTACGATCTAGCTTCTG 1028
Query 1015 GTACGGACCGTCCCTTCACCTTCGATCGCCTTGGTGATCCCTCGCT 1060
|||| || || ||||||| ||||||||| ||||| | ||||||||
Sbjct 1029 GTACAAACAGTTCCTTCACGTTCGATCGCTTTGGTAAACCCTCGCT 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55220599500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5