BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950447 Length=1126 Score E Sequences producing significant alignments: (Bits) Value AT5G55440.1 | Symbols: | Protein of unknown function (DUF295) ... 928 0.0 > AT5G55440.1 | Symbols: | Protein of unknown function (DUF295) | chr5:22465693-22467209 FORWARD LENGTH=1343 Length=1343 Score = 928 bits (502), Expect = 0.0 Identities = 884/1066 (83%), Gaps = 35/1066 (3%) Strand=Plus/Plus Query 17 aaaaaTGGCTCTGTTTC-TCAGCCGCGTCTTGACGCTCTCTGGACGCAGGGACAATGCTC 75 ||| ||||||||| ||| ||||||| ||| | ||| |||||||||||| ||||||||| Sbjct 22 AAATATGGCTCTG-TTCTTCAGCCGAATCTCAAAGCTTTCTGGACGCAGGAACAATGCTC 80 Query 76 GTTTCTTCTCATCATTGCCGCAGTTCCCGTATTTGCTAATGGGCGGTAAGAAGTTGGGAG 135 ||||||||||||||||||| | || ||| | ||| | || | |||||||||| ||| Sbjct 81 GTTTCTTCTCATCATTGCCTCCGTCCCCATGCTTGGTGCTGACCACTAAGAAGTTGCGAG 140 Query 136 AGTCTCC---GGAGGGTAAAATCAG-GAAGCACAGGTTATTTGATCCGACAACTGAAGAG 191 |||||| |||||| |||| | | | |||| |||||| || ||| | || ||| | Sbjct 141 GGTCTCCAGAGGAGGGCCTAATC-GTGCATCACAAGTTATTCGAACCGGCTACGGAAAAA 199 Query 192 ACAGTGTATAGCAAAGAGAAGACGAT-TCCC-AAGAAGC-TCAATGG-GCAACCTC-TCG 246 | |||||| |||| ||||||| | | |||| ||| ||| || |||| || || | || Sbjct 200 AAAGTGTACGGCAATGAGAAGAAG-TATCCCAAAG-AGCTTC-ATGGAGC-TCCGCTTC- 254 Query 247 TGGGAGCATC-ACAAGGTTGGATAGCTTCTCTGGAGAACAAAGACCTTACCGTGCATATC 305 |||||||||| | |||||||| | |||| | | || | |||||| ||| |||||| || Sbjct 255 TGGGAGCATCGA-AAGGTTGGGTCGCTTTTTTCAAGGAGAAAGACATTAGTGTGCATCTC 313 Query 306 ACGGATGTGTACAAGCCATG-GCTCTCATCTTCAAAAGTAATATCATTGCC-T---TCAA 360 |||||| |||||||||| || | |||||||| ||| ||| |||||||| || | |||| Sbjct 314 ACGGATCTGTACAAGCCTTGTG-TCTCATCTCCAAGAGTCATATCATTACCATCACTCAA 372 Query 361 --TTGGGTTTAAACCCTCAACACATGCAAC-GAGAGTGTCTTTCTCTTCTTCTGATCCTG 417 | | | ||||||| |||| ||||| || || ||||| | ||||||| |||||||||| Sbjct 373 GCTCGACTATAAACCCGCAACTCATGCCACGGA-AGTGTGTCTCTCTTCGTCTGATCCTG 431 Query 418 TCCAAGACGACTTTTCCGTGGCTGCAAAGTTTGACGAGTATCGGC-TAAGTGTATGTAGG 476 |||||||||||| || ||||||||||||||| | || |||| | |||||||||||||| Sbjct 432 TCCAAGACGACTATTACGTGGCTGCAAAGTTCAATGACTATC-ACGTAAGTGTATGTAGG 490 Query 477 CCTTATTGGGACTCTAAGTGGACTCACATCGAGACAGCTTATTCTCTTTTACCAGCCTCT 536 ||| |||||||||| | |||||||||| |||||| | ||| |||||||||||||||| Sbjct 491 CCTCGTTGGGACTCTGACTGGACTCACAACGAGACCGGTTACAGTCTTTTACCAGCCTCT 550 Query 537 GATCTCATGTATTCAAAGAGAGACAAAGTCTTTTACTTTACCAGTTTTAAGGGTAACTAC 596 || |||||||| || ||||||||||||| ||| ||||||| |||||||||||| |||| Sbjct 551 GAGCTCATGTACTCCAAGAGAGACAAAGCCTTCCACTTTACGAGTTTTAAGGGTCTCTAC 610 Query 597 ATGGCTTCGT-TGGATCTCACCAACAACTTCGAGCCCGAGTATCAACACTTACGCCTTCG 655 |||| ||| | || |||||| || || |||| | ||||| || | |||||||| | Sbjct 611 ATGGGTTC-TCTGTATCTCAGTAAAAAAGACGAGATCAAGTATAAAGAGATACGCCTTAG 669 Query 656 AAACCTGCCTAAGATCCCAGAGGTAGGTTGGGAGATGTTGGATAAATGTTTCATGACCCA 715 ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| | Sbjct 670 AAACCTGCCTAAGATTCCAGAGGCAGGTTGGGAGATGTTGGATAAATGTTCCATGACCAA 729 Query 716 CCACTTAGTGGAGTCTCCCTCTGGTGAACTTTTCTTCATCAAGTGGTACACACAGTGCAT 775 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 730 TCACTTAGTGGATTCTCCCTCTGGTGAACTTTTCTTCATCAAGTGGTACACACAGTGTAT 789 Query 776 TCACAAAGAGGACAAAGATGGGGATTTGGAATTTATCCACAGCAATACCAAGCGGTTCAT 835 ||||||||||||| |||||||||||||||||| | |||||||||| || ||||||||||| Sbjct 790 TCACAAAGAGGACGAAGATGGGGATTTGGAATGTCTCCACAGCAAAACTAAGCGGTTCAT 849 Query 836 GATCTTTAGGCAAGATGGGATGAGCAAAGACTTTTGTTACACGGAAGATATTGGAGATCT 895 | |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 850 GGTCTTTAGGCAAGATGGGATGAGCAAAGACTTTGGTTACACTGAAGATATTGGAGATCT 909 Query 896 TTGCATCTTCCTTAGTAAGAGTGAAGCCTTCTGTCTCTCGGCAAGCATGTACCCTAGG-C 954 |||||||||||| | |||||||||||||||||| || ||||||| ||||||| ||| | Sbjct 910 CTGCATCTTCCTTGGCAAGAGTGAAGCCTTCTGTGTCACGGCAAGTTTGTACCC-AGGGC 968 Query 955 TCAAACCTAACTCCATCTATTACATTGGCCCTAGACTTGGTTCTTACAATCTGGCTTCTG 1014 ||||||||||||||||||||||| ||||||||||| ||||||||||| |||| ||||||| Sbjct 969 TCAAACCTAACTCCATCTATTACCTTGGCCCTAGATTTGGTTCTTACGATCTAGCTTCTG 1028 Query 1015 GTACGGACCGTCCCTTCACCTTCGATCGCCTTGGTGATCCCTCGCT 1060 |||| || || ||||||| ||||||||| ||||| | |||||||| Sbjct 1029 GTACAAACAGTTCCTTCACGTTCGATCGCTTTGGTAAACCCTCGCT 1074 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55220599500 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5