BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950453
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57620.1 | Symbols: MYB36, AtMYB36 | myb domain protein 36 |... 1759 0.0
> AT5G57620.1 | Symbols: MYB36, AtMYB36 | myb domain protein 36
| chr5:23334817-23336566 FORWARD LENGTH=1267
Length=1267
Score = 1759 bits (952), Expect = 0.0
Identities = 1056/1106 (95%), Gaps = 7/1106 (1%)
Strand=Plus/Plus
Query 1 CATCACACCAAACATAATTAACACTTGGAAGAACAACAACAACGACAAGATCGAGAAAAG 60
||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||
Sbjct 11 CATCACACCAAACATAATTAACACTTGGAAG-AGAACAACAACGACAAGATCAAGAAAAG 69
Query 61 ACAAAGATTTGTAAGAAAATGGGAAGAGCTCCATGCTGCGACAAGGCAAACGTGAAGAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 ACAAAGATTTGTAAGAAAATGGGAAGAGCTCCATGCTGCGACAAGGCAAACGTGAAGAAA 129
Query 121 GGGCCATGGTCGCCGGAAGAAGATGTGAAGCTCAAGGATTACATCGACAAATATGGCACT 180
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 GGACCATGGTCACCGGAAGAAGATGTGAAGCTCAAGGATTACATCGACAAATATGGCACT 189
Query 181 GGTGGCAACTGGATCGCACTGCCTCAGAAAATTGGGCTGAAGAGATGTGGTAAGAGTTGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 GGTGGCAACTGGATCGCACTGCCTCAGAAAATTGGGCTGAAGAGATGTGGTAAGAGTTGC 249
Query 241 AGACTGAGATGGCTTAATTACTTAAGACCAAACATCAAACATGGTGGTTTTTCTGAGGAG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 AGACTGAGATGGCTTAATTACTTAAGACCAAACATCAAACATGGTGGTTTTTCTGAGGAA 309
Query 301 GAAGATAGTATCATCTTGAGTCTCTACATTAGCATTGGAAGCCGGTGGTCCATAATTGCA 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GAAGATAGAATCATCTTGAGTCTCTACATTAGCATTGGAAGCCGGTGGTCCATAATTGCA 369
Query 361 GCTCAGCTTCCTGGAAGGACTGACAATGATATCAAGAATTACTGGAACACAAAACTGAAG 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 370 GCTCAGCTTCCTGGAAGGACTGACAATGATATCAAGAATTATTGGAACACAAAACTGAAG 429
Query 421 AAGAAACTTCTTGGAAGACAGAAACAAATGAATCGTCAAGACTCAATAACCGATTCTACC 480
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 430 AAGAAACTTCTAGGAAGACAGAAACAAATGAATCGTCAAGACTCCATAACCGATTCTACT 489
Query 481 GAGAACAACCTCAATAACAATAACCACAATAAGAGTCCTCAGAATCTGAGCAATTCGGCA 540
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 490 GAGAACAACCTCAGCAACAATAACAACAATAAGAGTCCTCAGAATCTGAGCAATTCGGCA 549
Query 541 CTGGAGAGGCTCCAGCTTCACATGCAGCTTCAGAATCTACAGAGCCCTTTCTCTAGTTTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 CTGGAGAGGCTCCAGCTTCACATGCAGCTTCAGAATCTACAGAGCCCTTTCTCTAGTTTC 609
Query 601 TACAACAACCCTATCTTGTGGCCCAAGCTTCATCCATTGCTGCAGAGTACTACAACTACT 660
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 610 TACAACAACCCTATCTTGTGGCCCAAGCTTCATCCATTGCTCCAGAGCACTACAACTA-- 667
Query 661 CCTAATCAAAACCCCAAGCTTGCATCTCAAGAAAGCTTCCACCCCCTAGGAGTTAACGTT 720
| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 668 ---A-TCAAAACCCTAAGCTTGCATCTCAAGAAAGCTTCCACCCTTTAGGAGTTAACGTT 723
Query 721 GATCATCAGCACAACAATATGAAGCTAGCTGAGATCAACAATGGAGTTTCTTCTCTCTAT 780
||||||||||||||||||| ||||||||| |||| |||||||||| ||||||||||||
Sbjct 724 GATCATCAGCACAACAATACCAAGCTAGCTCAGATAAACAATGGAGCCTCTTCTCTCTAT 783
Query 781 TCGGAGAACGTAGAGCAATCCCAAAACCCTGCTCACGAATTTCAACCTAATTTCGGTTTT 840
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 784 TCGGAGAACGTAGAGCAATCCCAAAACCCTGCTCATGAATTTCAACCTAATTTCGGTTTT 843
Query 841 TCGCAGGACCTTCGAATAGATAATCATAACATGGACCTTATGAACAGAGGTGTTTCGAAG 900
|| |||||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||
Sbjct 844 TCACAGGACCTTCGATTAGATAATCATAACATGGACTTTATGAACAGAGGGGTTTCTAAA 903
Query 901 GAATTGTTTCAAGTGGGCAACGAATTTGAGCTAACGAACAGTTCGAGTTGGTGGTCAGAG 960
||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 904 GAACTGTTTCAAGTGGGCAACGAGTTTGAGCTAACGAACGGTTCGAGTTGGTGGTCAGAG 963
Query 961 GAAGTGGAGGTAGAGAGGAAAACGACGTCGTCAAGTTCTTGGGGATCAGCTTCGGTTCTT 1020
|||||||| |||||||||||||||||||||| ||||||||||| |||||||| || |||
Sbjct 964 GAAGTGGAACTAGAGAGGAAAACGACGTCGTCGAGTTCTTGGGGGTCAGCTTCTGTGCTT 1023
Query 1021 GATCAGACGACTGAAGGAATGGTTATGCTTCAAGATTACGCTCAGATGAGCTACCACAGT 1080
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GATCAGACAACTGAGGGAATGGTTATGCTTCAAGATTACGCTCAGATGAGCTACCACAGT 1083
Query 1081 GTTTGATAAGTTATATCATGCATATA 1106
|||| |||||||||||||||||||||
Sbjct 1084 GTTTAATAAGTTATATCATGCATATA 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54216588600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5