BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950465

Length=601
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G11950.1 | Symbols:  | Protein of unknown function (DUF1191)...   649    0.0  


> AT4G11950.1 | Symbols:  | Protein of unknown function (DUF1191) 
| chr4:7173276-7174259 REVERSE LENGTH=984
Length=984

 Score =  649 bits (351),  Expect = 0.0
 Identities = 482/543 (89%), Gaps = 18/543 (3%)
 Strand=Plus/Plus

Query  1    ATCCTTATGAGATTAATATAATGGGCACAGAACAAAACTCTATTTTGATCAAGTTCTTGA  60
            ||||||||||| ||||  |||||||||| ||||||||| ||||||||||||| ||||| |
Sbjct  443  ATCCTTATGAGGTTAACGTAATGGGCACGGAACAAAACCCTATTTTGATCAAATTCTT-A  501

Query  61   A-TAGCGTGGCAAGTGGGAGCCCTAAACCTAACACAAAGAAGAACTCATCTCTCTTGTGT  119
            |  || | ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct  502  AGCAGTGAGGCAAGTGGTAGCCCTAAACCTAACACGAAGAAGAACTCATCTGTCTTGTGT  561

Query  120  GCTTGCTTCACAAGTAACGGTAACATAACGTTTAGGGAGCAAGTTTCAGCCTCCGTTTTC  179
            ||||||||||||||||||||||||||||||||||| |||||||||||||| |  |||| |
Sbjct  562  GCTTGCTTCACAAGTAACGGTAACATAACGTTTAGAGAGCAAGTTTCAGCTTATGTTTGC  621

Query  180  TTGGGAACAAGACAAGGGCATTATGTGCTGGTGATTAGAGCTCATGATAGTAGTGGTCGT  239
            ||||||||||||||||||||||| | ||| ||||||||||||||||||||| | ||| | 
Sbjct  622  TTGGGAACAAGACAAGGGCATTACGCGCTTGTGATTAGAGCTCATGATAGTGGCGGTGGC  681

Query  240  GGTAGTACGTTGGTAACGCCGCCGTCATCTCCGGCGGTGAATGACGGTGGCGGAGGGAAA  299
            ||||||||| ||||||| ||| |||||||||||||  ||| |||||||||||||||||||
Sbjct  682  GGTAGTACGGTGGTAACACCGTCGTCATCTCCGGCTTTGACTGACGGTGGCGGAGGGAAA  741

Query  300  TTG-GC-GGT------TGG-G------AGTGTGATTGGGTCAATGATTGGAGCGTTTCTG  344
            ||| || |||      ||| |      |||||||| || ||||| |||||||||||||||
Sbjct  742  TTGAGCCGGTGGAAAGTGGCGGTTGGGAGTGTGATAGGTTCAATAATTGGAGCGTTTCTG  801

Query  345  TTACGGTTATTGGTGGTGGCGATGGTAGTgaaagggaagaagaaaacgatgagagaggag  404
            ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  802  TTAGGGTTATTGGTGGTGGCGATGGTAGTGAAAGGGAAGAAGAAAGCGATGAGAGAGGAG  861

Query  405  atggagagaagagcttatgaagaagaagCACTTCCGGTTTCAATGGTGGGTCATGTTAGA  464
            |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  862  ATGGAGAGGAGAGCTTATGAAGAAGAAGCACTTCAGGTTTCAATGGTGGGTCATGTTAGA  921

Query  465  GCTAATCCTAATGCTTCAAGAACAAGAACGGTTCCAAGACTTGACAATACTAGGTACA-G  523
            ||||||||||||||||| ||| |||||||| |||||||| |||| ||||||||||| | |
Sbjct  922  GCTAATCCTAATGCTTCGAGATCAAGAACGATTCCAAGATTTGAAAATACTAGGTATAAG  981

Query  524  TAA  526
            |||
Sbjct  982  TAA  984



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28934868672


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5