BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950466
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57740.1 | Symbols: XBAT32 | XB3 ortholog 2 in Arabidopsis t... 2516 0.0
> AT5G57740.1 | Symbols: XBAT32 | XB3 ortholog 2 in Arabidopsis
thaliana | chr5:23394585-23397650 REVERSE LENGTH=2236
Length=2236
Score = 2516 bits (1362), Expect = 0.0
Identities = 1493/1557 (96%), Gaps = 5/1557 (0%)
Strand=Plus/Plus
Query 1 TTTCAGCTTTGTATCGTAAAACGATGAGGTTTCTAAGCCTCGTCGGAAACTCATTCGGTT 60
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TTTCAATTTTGTATCGTAAAACGATGAGGTTTCTAAGCCTCGTCGGAAACTCATTCGGTT 542
Query 61 GTTCTGCGTCCGGCGAACGCTTAGTATCAGCGGCCAGAGACGGCGATTTACAGGAAGCCA 120
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 543 GTTCTGCGTCCGGCGAACGCTTAGTATCAGCGGCCAGAGACGGTGATTTACAGGAAGCTA 602
Query 121 AAGCTCTCTTAGATTACAACCCAAGACTCGCTCGTTACTCTACTTTTGGCGTTCGTAACT 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 603 AAGCTCTCTTAGATTACAATCCAAGACTCGCTCGTTACTCTACTTTTGGCGTTCGTAACT 662
Query 181 CTCCTCTTCATTACTCTGCCGCTCAAGGCCACCACGAGATAGTTTCTCTGTTGGTGGAAT 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CTCCTCTTCATTACTCCGCCGCTCAAGGCCACCACGAGATAGTTTCTCTGTTGGTGGAAT 722
Query 241 CAGGAGTTGATATTAATCTCCGGAACTACCGTGGACAGACGGCTTTGATGCAAGCTTGTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 CAGGAGTTGATATTAATCTCCGGAACTACCGTGGACAGACGGCTTTGATGCAAGCTTGTC 782
Query 301 AACATGGTCATTGGGAGGTTGTTTTGATTCTGATTCTCTTTGGTGCTAATATTCACAGAT 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 783 AACATGGTCATTGGGAGGTTGTTTTGATTCTGATTCTTTTTGGTGCTAATATTCACAGAT 842
Query 361 CAGATTACTTAAATGGCGGTACTGCTTTACACCTTGCGGCTTTAAATGGTCATCCTCGGT 420
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 843 CAGATTACTTAAATGGTGGTACTGCTTTACACCTTGCGGCTTTAAATGGTCACCCTCGGT 902
Query 421 GTATCAGGATCTTGCTTTCGGAGTATATACCAAGTGTTCCTAATTGCTGGAGCCTTTTAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GTATCAGGATCTTGCTTTCGGAGTATATACCAAGTGTTCCTAATTGCTGGAGCCTTTTAA 962
Query 481 AGAATAAGAAATCTTCAGTTGCTGGATTTGATCCAAGTGTTCTTCACGAAGTGATCAACA 540
||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct 963 AGAATAAGAAAACTTCAGTTGCTGGATTCGATTCTAGTGTTCTTCACGAAGTGATCAACA 1022
Query 541 GAGCAGCAGATGGAGGAATCACACCTCTTCATGTAGCGGCTTTGAACGGACACATAGAGA 600
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1023 GAGCAGCAGATGGTGGAATCACACCTCTTCATGTGGCGGCTTTGAACGGACATATAGAGA 1082
Query 601 CGGTGCAGTTGCTCTTGGATTTGGGAGCTTCGGTTACTCAGGTCACAGTGGAAGATGGAA 660
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1083 CGGTGCAGTTACTCTTGGATTTGGGAGCTTCGGTTACTCAGGTCACTGTGGAAGATGGAA 1142
Query 661 CCACAATAGATCTTATAGGTGCTGGGAGTACAGCTCTTCATTATGCTTCATGTGGCGGAA 720
| || |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1143 CTACTATAGATCTTATAGGTGCTGGGAGTACAGCTCTCCATTATGCTTCATGTGGTGGAA 1202
Query 721 ACACGCAGTGTTGCCAGCTTTTGATCAGTAAGGGTGCTTGTTTAGCTGCCGTAAACTCCA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 ACACGCAGTGTTGCCAGCTTTTGATCAGTAAGGGTGCTTGTTTAGCTGCCGTAAACTCCA 1262
Query 781 ACGGATGGACGCCATTGATGGTTGCTCGTTCATGGCACCGGAACTGGCTGGAAGAAATCC 840
|||||||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1263 ACGGATGGACACCAATGATGGTAGCTCGTTCATGGCACCGAAACTGGCTGGAAGAAATCC 1322
Query 841 TGAACCCAACCACAGAACAACCACAACTCCATTTGCCAAATGTCCCCTCTCCTTTCCTCT 900
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 TGAACCCAACAACAGAACAACCACAACTCCATTTGCCAAATGTCCCCTCTCCTTTCCTCT 1382
Query 901 GCCTTCCTTTAATGAGCATTGTCAAGATTGCTCAAGAATGCGGCTGGCGAGAAAACGATT 960
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1383 GCCTTCCTTTAATGAGCATTGTCAATATTGCTCAAGAATGCGGCTGGCGAGAAAACGATT 1442
Query 961 GTCTCACTCCATGTCGTGACCCTTGTGCCGTTTGTTTGGAAAGAAAATGCACTGTAGCAG 1020
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1443 GTCTGACTCCATGTCGTGACCCTTGTGCCGTTTGTTTGGAAAGAAAATGCACTGTGGCAG 1502
Query 1021 CAGATGGATGTGCTCATGAGTTCTGCACAAACTGCGCATTATACCTAAGCACCACAAACA 1080
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1503 CAGATGGATGTGCTCATGAGTTCTGCACAAACTGTGCATTATACCTAAGCACCACAAGCA 1562
Query 1081 TAACATCATCAAAGACATCACAA-GCCACCCCAGGCTCTGTCCCATGTCCTCTCTGTCGC 1139
||||||| |||||||| ||| || | ||| |||||||||||||| |||||||||||||||
Sbjct 1563 TAACATCGTCAAAGACCTCA-AACGTCACACCAGGCTCTGTCCCGTGTCCTCTCTGTCGC 1621
Query 1140 AACGGCATTGTATCTTTCACCAAACTTCCCCATACAAT---AACAGCAACAACAACAACA 1196
|| |||||||||||||||||||||||||||||||||| |||| ||| |||| |||||
Sbjct 1622 AATGGCATTGTATCTTTCACCAAACTTCCCCATACAACGGCAACAACAAGAACATCAACA 1681
Query 1197 TCATCAAGAACAAGCATCTCCTTGTCCTTTTGCACTTGCTCCTCTGATGTCTTAGACACA 1256
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1682 TCATCAAGAACAAGCATCTCCTTGTCCTTCTGCACTTGCTCCTCTGATGTCTTAGACACA 1741
Query 1257 GCTCTCCTCACTAACCCTCATTACAGTTGTAGACCGGTTGTGTCAAGAACCGGTACTCGA 1316
|||||||| ||||||||||| |||||||||| |||||||||||||||||| ||| |||||
Sbjct 1742 GCTCTCCTAACTAACCCTCACTACAGTTGTAAACCGGTTGTGTCAAGAACGGGTTCTCGA 1801
Query 1317 ATTCCACAATCTGCTAGATCATCATCGTTTCGGTCTCTTAGCTGCCGGCGGTTTCCTCCA 1376
| ||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1802 ACTCCACAATCCGCTAGATCATCAGCGTTTCGGTCTCTTAGCTGCCGCCGGTTTCCTCCA 1861
Query 1377 AGTCTCTGCCTTGGTGGCTCAGATGTTGATGAACCGCAAAGCCGGTTAATGGGTGGATCA 1436
||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 1862 AGTCTCTGCCTTGGTGGCTCAGATGTTGATGAACCTCGAAGCCGGTTAATTGGTGGATCA 1921
Query 1437 TATTCAAGATCCGGTGTAGGATTCAGGCGCTCGACGTCACAGGTTGAAGGGAAACGTTCT 1496
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 1922 TATTCAAGATCCGGTGTAGGATTCAGGCGATCAACGTCGCAGGTTGAAGGGAAACGTTCT 1981
Query 1497 TGGTTTTCTGCTCTTAACCATTGTGTTACAACCGGTGGAAGTGCTTGCTAACTCAAA 1553
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1982 TGGTTTTCTGCACTTAACCATTGTGTTACAACCGGTGGAAGTGCTTGCTAACTCAAA 2038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77459440935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5