BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950467
Length=1283
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57740.1 | Symbols: XBAT32 | XB3 ortholog 2 in Arabidopsis t... 1402 0.0
AT2G40660.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 231 9e-60
> AT5G57740.1 | Symbols: XBAT32 | XB3 ortholog 2 in Arabidopsis
thaliana | chr5:23394585-23397650 REVERSE LENGTH=2236
Length=2236
Score = 1402 bits (759), Expect = 0.0
Identities = 858/906 (95%), Gaps = 5/906 (1%)
Strand=Plus/Plus
Query 257 CGGCTTTGAACGGACACATAGAGACGGTGCAGTTGCTCTTGGATTTGGGAGCTTCGGTTA 316
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1059 CGGCTTTGAACGGACATATAGAGACGGTGCAGTTACTCTTGGATTTGGGAGCTTCGGTTA 1118
Query 317 CTCAGGTCACAGTGGAAGATGGAACCACAATAGATCTTATAGGTGCTGGGAGTACAGCTC 376
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1119 CTCAGGTCACTGTGGAAGATGGAACTACTATAGATCTTATAGGTGCTGGGAGTACAGCTC 1178
Query 377 TTCATTATGCTTCATGTGGCGGAAACACGCAGTGTTGCCAGCTTTTGATCAGTAAGGGTG 436
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 TCCATTATGCTTCATGTGGTGGAAACACGCAGTGTTGCCAGCTTTTGATCAGTAAGGGTG 1238
Query 437 CTTGTTTAGCTGCCGTAAACTCCAACGGATGGACGCCATTGATGGTTGCTCGTTCATGGC 496
|||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||
Sbjct 1239 CTTGTTTAGCTGCCGTAAACTCCAACGGATGGACACCAATGATGGTAGCTCGTTCATGGC 1298
Query 497 ACCGGAACTGGCTGGAAGAAATCCTGAACCCAACCACAGAACAACCACAACTCCATTTGC 556
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1299 ACCGAAACTGGCTGGAAGAAATCCTGAACCCAACAACAGAACAACCACAACTCCATTTGC 1358
Query 557 CAAATGTCCCCTCTCCTTTCCTCTGCCTTCCTTTAATGAGCATTGTCAAGATTGCTCAAG 616
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1359 CAAATGTCCCCTCTCCTTTCCTCTGCCTTCCTTTAATGAGCATTGTCAATATTGCTCAAG 1418
Query 617 AATGCGGCTGGCGAGAAAACGATTGTCTCACTCCATGTCGTGACCCTTGTGCCGTTTGTT 676
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1419 AATGCGGCTGGCGAGAAAACGATTGTCTGACTCCATGTCGTGACCCTTGTGCCGTTTGTT 1478
Query 677 TGGAAAGAAAATGCACTGTAGCAGCAGATGGATGTGCTCATGAGTTCTGCACAAACTGCG 736
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1479 TGGAAAGAAAATGCACTGTGGCAGCAGATGGATGTGCTCATGAGTTCTGCACAAACTGTG 1538
Query 737 CATTATACCTAAGCACCACAAACATAACATCATCAAAGACATCACAA-GCCACCCCAGGC 795
||||||||||||||||||||| ||||||||| |||||||| ||| || | ||| ||||||
Sbjct 1539 CATTATACCTAAGCACCACAAGCATAACATCGTCAAAGACCTCA-AACGTCACACCAGGC 1597
Query 796 TCTGTCCCATGTCCTCTCTGTCGCAACGGCATTGTATCTTTCACCAAACTTCCCCATACA 855
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1598 TCTGTCCCGTGTCCTCTCTGTCGCAATGGCATTGTATCTTTCACCAAACTTCCCCATACA 1657
Query 856 AT---AACAGCAACAACAACAACATCATCAAGAACAAGCATCTCCTTGTCCTTTTGCACT 912
| |||| ||| |||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1658 ACGGCAACAACAAGAACATCAACATCATCAAGAACAAGCATCTCCTTGTCCTTCTGCACT 1717
Query 913 TGCTCCTCTGATGTCTTAGACACAGCTCTCCTCACTAACCCTCATTACAGTTGTAGACCG 972
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct 1718 TGCTCCTCTGATGTCTTAGACACAGCTCTCCTAACTAACCCTCACTACAGTTGTAAACCG 1777
Query 973 GTTGTGTCAAGAACCGGTACTCGAATTCCACAATCTGCTAGATCATCATCGTTTCGGTCT 1032
|||||||||||||| ||| |||||| ||||||||| |||||||||||| |||||||||||
Sbjct 1778 GTTGTGTCAAGAACGGGTTCTCGAACTCCACAATCCGCTAGATCATCAGCGTTTCGGTCT 1837
Query 1033 CTTAGCTGCCGGCGGTTTCCTCCAAGTCTCTGCCTTGGTGGCTCAGATGTTGATGAACCG 1092
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 CTTAGCTGCCGCCGGTTTCCTCCAAGTCTCTGCCTTGGTGGCTCAGATGTTGATGAACCT 1897
Query 1093 CAAAGCCGGTTAATGGGTGGATCATATTCAAGATCCGGTGTAGGATTAAGGCGATCGACG 1152
| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1898 CGAAGCCGGTTAATTGGTGGATCATATTCAAGATCCGGTGTAGGATTCAGGCGATCAACG 1957
Query 1153 TCTCAG 1158
|| |||
Sbjct 1958 TCGCAG 1963
> AT2G40660.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr2:16965933-16969035 FORWARD LENGTH=1417
Length=1417
Score = 231 bits (125), Expect = 9e-60
Identities = 131/134 (98%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 123 GATTGAAGGAAAGCCAGAAGACGTACTGAACCCAAAAAAGAAGCAACTAGAGAAGATAAC 182
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GATTGAAGGAAAGCCAGAAGATGTACTGAACCCAAAAAAGAAGCAACTAGAGAAGATAAC 1139
Query 183 ACCGGGTCTCTACACTGATGAGAATGGCGTAGCCACATACAAAGGCATACCATTCATGAC 242
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1140 ACCGGGTCTCTACACTGATGAAAATGGCGTAGCCACATACAAAGGCATACAATTCATGAC 1199
Query 243 CTCGGCTGGACCTT 256
||||||||||||||
Sbjct 1200 CTCGGCTGGACCTT 1213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63102085065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5