BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950467 Length=1283 Score E Sequences producing significant alignments: (Bits) Value AT5G57740.1 | Symbols: XBAT32 | XB3 ortholog 2 in Arabidopsis t... 1402 0.0 AT2G40660.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 231 9e-60 > AT5G57740.1 | Symbols: XBAT32 | XB3 ortholog 2 in Arabidopsis thaliana | chr5:23394585-23397650 REVERSE LENGTH=2236 Length=2236 Score = 1402 bits (759), Expect = 0.0 Identities = 858/906 (95%), Gaps = 5/906 (1%) Strand=Plus/Plus Query 257 CGGCTTTGAACGGACACATAGAGACGGTGCAGTTGCTCTTGGATTTGGGAGCTTCGGTTA 316 |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1059 CGGCTTTGAACGGACATATAGAGACGGTGCAGTTACTCTTGGATTTGGGAGCTTCGGTTA 1118 Query 317 CTCAGGTCACAGTGGAAGATGGAACCACAATAGATCTTATAGGTGCTGGGAGTACAGCTC 376 |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1119 CTCAGGTCACTGTGGAAGATGGAACTACTATAGATCTTATAGGTGCTGGGAGTACAGCTC 1178 Query 377 TTCATTATGCTTCATGTGGCGGAAACACGCAGTGTTGCCAGCTTTTGATCAGTAAGGGTG 436 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1179 TCCATTATGCTTCATGTGGTGGAAACACGCAGTGTTGCCAGCTTTTGATCAGTAAGGGTG 1238 Query 437 CTTGTTTAGCTGCCGTAAACTCCAACGGATGGACGCCATTGATGGTTGCTCGTTCATGGC 496 |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| Sbjct 1239 CTTGTTTAGCTGCCGTAAACTCCAACGGATGGACACCAATGATGGTAGCTCGTTCATGGC 1298 Query 497 ACCGGAACTGGCTGGAAGAAATCCTGAACCCAACCACAGAACAACCACAACTCCATTTGC 556 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1299 ACCGAAACTGGCTGGAAGAAATCCTGAACCCAACAACAGAACAACCACAACTCCATTTGC 1358 Query 557 CAAATGTCCCCTCTCCTTTCCTCTGCCTTCCTTTAATGAGCATTGTCAAGATTGCTCAAG 616 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1359 CAAATGTCCCCTCTCCTTTCCTCTGCCTTCCTTTAATGAGCATTGTCAATATTGCTCAAG 1418 Query 617 AATGCGGCTGGCGAGAAAACGATTGTCTCACTCCATGTCGTGACCCTTGTGCCGTTTGTT 676 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1419 AATGCGGCTGGCGAGAAAACGATTGTCTGACTCCATGTCGTGACCCTTGTGCCGTTTGTT 1478 Query 677 TGGAAAGAAAATGCACTGTAGCAGCAGATGGATGTGCTCATGAGTTCTGCACAAACTGCG 736 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 1479 TGGAAAGAAAATGCACTGTGGCAGCAGATGGATGTGCTCATGAGTTCTGCACAAACTGTG 1538 Query 737 CATTATACCTAAGCACCACAAACATAACATCATCAAAGACATCACAA-GCCACCCCAGGC 795 ||||||||||||||||||||| ||||||||| |||||||| ||| || | ||| |||||| Sbjct 1539 CATTATACCTAAGCACCACAAGCATAACATCGTCAAAGACCTCA-AACGTCACACCAGGC 1597 Query 796 TCTGTCCCATGTCCTCTCTGTCGCAACGGCATTGTATCTTTCACCAAACTTCCCCATACA 855 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1598 TCTGTCCCGTGTCCTCTCTGTCGCAATGGCATTGTATCTTTCACCAAACTTCCCCATACA 1657 Query 856 AT---AACAGCAACAACAACAACATCATCAAGAACAAGCATCTCCTTGTCCTTTTGCACT 912 | |||| ||| |||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 1658 ACGGCAACAACAAGAACATCAACATCATCAAGAACAAGCATCTCCTTGTCCTTCTGCACT 1717 Query 913 TGCTCCTCTGATGTCTTAGACACAGCTCTCCTCACTAACCCTCATTACAGTTGTAGACCG 972 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| Sbjct 1718 TGCTCCTCTGATGTCTTAGACACAGCTCTCCTAACTAACCCTCACTACAGTTGTAAACCG 1777 Query 973 GTTGTGTCAAGAACCGGTACTCGAATTCCACAATCTGCTAGATCATCATCGTTTCGGTCT 1032 |||||||||||||| ||| |||||| ||||||||| |||||||||||| ||||||||||| Sbjct 1778 GTTGTGTCAAGAACGGGTTCTCGAACTCCACAATCCGCTAGATCATCAGCGTTTCGGTCT 1837 Query 1033 CTTAGCTGCCGGCGGTTTCCTCCAAGTCTCTGCCTTGGTGGCTCAGATGTTGATGAACCG 1092 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1838 CTTAGCTGCCGCCGGTTTCCTCCAAGTCTCTGCCTTGGTGGCTCAGATGTTGATGAACCT 1897 Query 1093 CAAAGCCGGTTAATGGGTGGATCATATTCAAGATCCGGTGTAGGATTAAGGCGATCGACG 1152 | |||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 1898 CGAAGCCGGTTAATTGGTGGATCATATTCAAGATCCGGTGTAGGATTCAGGCGATCAACG 1957 Query 1153 TCTCAG 1158 || ||| Sbjct 1958 TCGCAG 1963 > AT2G40660.1 | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:16965933-16969035 FORWARD LENGTH=1417 Length=1417 Score = 231 bits (125), Expect = 9e-60 Identities = 131/134 (98%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 123 GATTGAAGGAAAGCCAGAAGACGTACTGAACCCAAAAAAGAAGCAACTAGAGAAGATAAC 182 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1080 GATTGAAGGAAAGCCAGAAGATGTACTGAACCCAAAAAAGAAGCAACTAGAGAAGATAAC 1139 Query 183 ACCGGGTCTCTACACTGATGAGAATGGCGTAGCCACATACAAAGGCATACCATTCATGAC 242 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 1140 ACCGGGTCTCTACACTGATGAAAATGGCGTAGCCACATACAAAGGCATACAATTCATGAC 1199 Query 243 CTCGGCTGGACCTT 256 |||||||||||||| Sbjct 1200 CTCGGCTGGACCTT 1213 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63102085065 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5