BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950468
Length=277
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57760.1 | Symbols: | unknown protein; Has 5 Blast hits to ... 416 5e-116
AT5G57770.1 | Symbols: | Plant protein of unknown function (DU... 207 3e-53
> AT5G57760.1 | Symbols: | unknown protein; Has 5 Blast hits to
5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:23400715-23401267 FORWARD LENGTH=553
Length=553
Score = 416 bits (225), Expect = 5e-116
Identities = 254/268 (95%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 11 GCAAGAAGTGATGAAGATGGTGAAGTGTAAGAA-GTTCACCCACCGCAGTCTCAAAGGAC 69
||||||||||||||||||||||||||||||||| ||| | |||||| ||| ||||||||
Sbjct 1 GCAAGAAGTGATGAAGATGGTGAAGTGTAAGAAGGTT-AGGCACCGCGGTCGCAAAGGAC 59
Query 70 GAAAGGAAAAACCCAAGTTTCGAGAAACTTGTATTCAAAGAAACCTCGGGATCCTTCGTA 129
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 60 AAAAGGAGAAACCCAAGTTTCGAGAAACTTGTATGCAAAGAAACCTCGGGATCCTTCGCA 119
Query 130 GGATTGTACCAGGCTGTGAAGAGACCGAGGACGAGGAAGCCTTGTTTCTCAAGTCAATTC 189
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 120 GGATTGTACCAGGCTGTGAAGAGATCGAAGACGAGGAAGCCTTGTTTCTCAAGTCAATTC 179
Query 190 AGCATCTCTTGCTTCTCAAATCTCAGGTTACTTTACTTAGAAAGCTAGCTGATGTATGTG 249
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 180 AGCATCTCTTGCTTCTCAAATCTCAGGTTAATTTACTTAAAAAGCTAGCTGATGTATGTG 239
Query 250 GAGTCTAATTAAAAGAACGTAAGTTCTC 277
||||||||||||||||||||||||||||
Sbjct 240 GAGTCTAATTAAAAGAACGTAAGTTCTC 267
> AT5G57770.1 | Symbols: | Plant protein of unknown function (DUF828)
with plant pleckstrin homology-like region | chr5:23400864-23403130
REVERSE LENGTH=1469
Length=1469
Score = 207 bits (112), Expect = 3e-53
Identities = 116/118 (98%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 160 ACGAGGAAGCCTTGTTTCTCAAGTCAATTCAGCATCTCTTGCTTCTCAAATCTCAGGTTA 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1469 ACGAGGAAGCCTTGTTTCTCAAGTCAATTCAGCATCTCTTGCTTCTCAAATCTCAGGTTA 1410
Query 220 CTTTACTTAGAAAGCTAGCTGATGTATGTGGAGTCTAATTAAAAGAACGTAAGTTCTC 277
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 ATTTACTTAAAAAGCTAGCTGATGTATGTGGAGTCTAATTAAAAGAACGTAAGTTCTC 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12717740497
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5