BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950472

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G57785.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   414    2e-115


> AT5G57785.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23408896-23409422 
REVERSE LENGTH=527
Length=527

 Score =  414 bits (224),  Expect = 2e-115
 Identities = 252/266 (95%), Gaps = 0/266 (0%)
 Strand=Plus/Plus

Query  1    GAAGAAGACCGTTCGTGTGCAAAAGGATGAGGTGTAGAGCACTAAACATTCGGAGAAGAA  60
            ||||||||||||||||||||||||  ||||||||||||||||| |||||||| |||||||
Sbjct  71   GAAGAAGACCGTTCGTGTGCAAAAACATGAGGTGTAGAGCACTTAACATTCGTAGAAGAA  130

Query  61   AGAGAGTAATGGTTAATGTGAGCTCAAGGAAGCTCATGACCCGTCTCCGGCGAATGGTTG  120
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  131  AGAGAGTAATGGTTAATGTGAGCTCAAGGAAGCTCATGACCCGTCTACGGCGAATGGTTG  190

Query  121  CTCCGGAAACGAGTTTTTCCGATGAGGTTGACGGTGCCACACTATATCGGCTCACGGCTG  180
            ||||||| |||||||||||||  |||||||||||||| ||||| ||||| ||||||||||
Sbjct  191  CTCCGGAGACGAGTTTTTCCGGCGAGGTTGACGGTGCTACACTTTATCGACTCACGGCTG  250

Query  181  ATCACATTTTCCTACTTCAAGCAAAAATCCAACTTCTTCGTCGTATTTCTTCTGTTTGTG  240
            ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  251  ATCACATTTTCTTACTTCAAGCAAGAATCCAACTTCTTCGTCGTATTTCTTCTGTTTGTG  310

Query  241  GTCTCTAGATCGAAGATACACATGGC  266
            ||||||||||||||||||||| ||||
Sbjct  311  GTCTCTAGATCGAAGATACACGTGGC  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12265330756


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5