BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950476
Length=277
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57815.1 | Symbols: | Cytochrome c oxidase, subunit Vib fam... 431 2e-120
AT4G28060.1 | Symbols: | Cytochrome c oxidase, subunit Vib fam... 307 3e-83
> AT5G57815.1 | Symbols: | Cytochrome c oxidase, subunit Vib family
protein | chr5:23426668-23427856 FORWARD LENGTH=541
Length=541
Score = 431 bits (233), Expect = 2e-120
Identities = 254/264 (96%), Gaps = 1/264 (0%)
Strand=Plus/Plus
Query 1 ATTCATTGATCAGATCAGCCATGGAAGACGAGATTGAACTGAAAACTGCTCCTGCTGATT 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 66 ATTCATTGATCAGATCAGCCATGGAAGACGAGATTGAATTGAAAACTGCTCCTGCTGATT 125
Query 61 TCCGGTTCCCTACAACAAATCAAACCAGGCACTGCTTCACTCGGTACATCGAGTTCCACA 120
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 126 TCCGGTTTCCTACAACAAATCAAACTAGGCACTGCTTCACTCGGTACATCGAGTTTCACA 185
Query 121 GGTGTACAACTGCAAAGGGCGAGGAGTCTAATGACTGCGAAAGGTTTGCCAAGTATTACC 180
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 186 GGTGTACAACTGCAAAGGGAGAGGAGTCTAATGACTGTGAAAGGTTTGCCAAGTATTACC 245
Query 181 GCGCTCTCTGTCCTGGAGAATGGGTTGAGAAGTGGAACGAGCAGAGGGAGAGTGGAACTT 240
| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 246 GTGCCCTCTGTCCTGGAGAATGGGTTGACAAGTGGAACGAGCAGAGGGAGAGTGGAACTT 305
Query 241 TTCCAGGTCCTCTTTGAACCTAAG 264
|||||||||||||||||||| |||
Sbjct 306 TTCCAGGTCCTCTTTGAACC-AAG 328
> AT4G28060.1 | Symbols: | Cytochrome c oxidase, subunit Vib family
protein | chr4:13943872-13945773 REVERSE LENGTH=554
Length=554
Score = 307 bits (166), Expect = 3e-83
Identities = 228/258 (88%), Gaps = 4/258 (2%)
Strand=Plus/Plus
Query 1 ATTCATTGATCAGATCAGCCATGGAAGACGAGATTGAACTGAAAACTGCTCCTGCTGATT 60
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 154 ATTCATT--TCAGATCAGCCATGGAGGACGAGATTGAACTGAAAACTGCTCCTGCTGATT 211
Query 61 TCCGGTTCCCTACAACAAATCAAACCAGGCACTGCTTCACTCGGTACATCGAGTTCCACA 120
| ||||| || |||||||| ||||| |||||||||||||| || ||||| ||||||||||
Sbjct 212 TTCGGTTTCCAACAACAAACCAAACGAGGCACTGCTTCACCCGTTACATTGAGTTCCACA 271
Query 121 GGTGTACAACTGCAAAGGGCGAGGA-GTCTAATGACTGCGAAAGGTTTGCCAAGTATTAC 179
|||| ||||||||||| || ||||| | | ||||| ||||| ||||| |||||||| |||
Sbjct 272 GGTGCACAACTGCAAAAGGTGAGGATG-CAAATGAATGCGAGAGGTTCGCCAAGTACTAC 330
Query 180 CGCGCTCTCTGTCCTGGAGAATGGGTTGAGAAGTGGAACGAGCAGAGGGAGAGTGGAACT 239
||||||||||| ||||| ||||||||||| |||||||| ||||||||||||| ||||||
Sbjct 331 CGCGCTCTCTGCCCTGGGGAATGGGTTGACAAGTGGAATGAGCAGAGGGAGACTGGAACA 390
Query 240 TTTCCAGGTCCTCTTTGA 257
|| || || |||||||||
Sbjct 391 TTCCCTGGCCCTCTTTGA 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12717740497
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5