BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950479
Length=211
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61455.1 | Symbols: U2.7 | U2.7; snRNA | chr5:24713264-24714... 193 7e-49
AT3G56825.1 | Symbols: U2.4 | U2.4; snRNA | chr3:21041727-21042... 180 5e-45
AT5G09585.1 | Symbols: U2.5 | U2.5; snRNA | chr5:2974555-297530... 174 2e-43
AT3G56705.1 | Symbols: U2.6 | U2.6; snRNA | chr3:21004259-21004... 174 2e-43
AT3G57765.1 | Symbols: U2.3 | U2.3; snRNA | chr3:21397262-21398... 174 2e-43
AT3G57645.1 | Symbols: U2.2 | U2.2; snRNA | chr3:21346342-21347... 167 4e-41
AT3G57770.1 | Symbols: | Protein kinase superfamily protein | ... 137 3e-32
AT1G16820.1 | Symbols: | vacuolar ATP synthase catalytic subun... 137 3e-32
> AT5G61455.1 | Symbols: U2.7 | U2.7; snRNA | chr5:24713264-24714094
REVERSE LENGTH=831
Length=831
Score = 193 bits (104), Expect = 7e-49
Identities = 158/183 (86%), Gaps = 8/183 (4%)
Strand=Plus/Minus
Query 1 TAGAGTTAATATCGTGTGGGCCAATGACCCACATACCAGATATTAAACTGATAAGAACAG 60
|||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 591 TAGAGTTAATATCGTGTGGGCCGATGGCCCACATATCAGATATTAAACTGATAAGAACAG 532
Query 61 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGAATTGTTTGATCACAA-GG 119
|||||||||||||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 531 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGAATTGTTCG-TGGCCGTGG 473
Query 120 CCTTGTTATTAATACTACTACTTACTTCTCAAAGACATCTTAA---GTTATCGATGTGGG 176
||| |||||| |||||||| | | ||| || || |||||| |||| |||||||||
Sbjct 472 CCTCGTTATTTATACTACT-CGT-CTTGTCTTC-ACCTCTTAAATTGTTAGCGATGTGGG 416
Query 177 ACT 179
|||
Sbjct 415 ACT 413
> AT3G56825.1 | Symbols: U2.4 | U2.4; snRNA | chr3:21041727-21042609
REVERSE LENGTH=883
Length=883
Score = 180 bits (97), Expect = 5e-45
Identities = 103/106 (97%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 1 TAGAGTTAATATCGTGTGGGCCAATGACCCACATACCAGATATTAAACTGATAAGAACAG 60
|||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 694 TAGAGTTAATATCGTGTGGGCCGATGGCCCACATATCAGATATTAAACTGATAAGAACAG 635
Query 61 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGAATTG 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGAATTG 589
> AT5G09585.1 | Symbols: U2.5 | U2.5; snRNA | chr5:2974555-2975306
FORWARD LENGTH=752
Length=752
Score = 174 bits (94), Expect = 2e-43
Identities = 102/106 (96%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 1 TAGAGTTAATATCGTGTGGGCCAATGACCCACATACCAGATATTAAACTGATAAGAACAG 60
|||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 557 TAGAGTTAATATCGTGTGGGCCGATGGCCCACATATCAGATATTAAACTGATAAGAACAG 498
Query 61 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGAATTG 106
|||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 497 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGATTTG 452
> AT3G56705.1 | Symbols: U2.6 | U2.6; snRNA | chr3:21004259-21004809
FORWARD LENGTH=551
Length=551
Score = 174 bits (94), Expect = 2e-43
Identities = 100/103 (97%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 1 TAGAGTTAATATCGTGTGGGCCAATGACCCACATACCAGATATTAAACTGATAAGAACAG 60
|||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 334 TAGAGTTAATATCGTGTGGGCCGATGGCCCACATATCAGATATTAAACTGATAAGAACAG 275
Query 61 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGAA 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGAA 232
> AT3G57765.1 | Symbols: U2.3 | U2.3; snRNA | chr3:21397262-21398132
REVERSE LENGTH=871
Length=871
Score = 174 bits (94), Expect = 2e-43
Identities = 102/106 (96%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 1 TAGAGTTAATATCGTGTGGGCCAATGACCCACATACCAGATATTAAACTGATAAGAACAG 60
|||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 614 TAGAGTTAATATCGTGTGGGCCGATGGCCCACATATCAGATATTAAACTGATAAGAACAG 555
Query 61 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGAATTG 106
|||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 554 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGATTTG 509
> AT3G57645.1 | Symbols: U2.2 | U2.2; snRNA | chr3:21346342-21347204
FORWARD LENGTH=863
Length=863
Score = 167 bits (90), Expect = 4e-41
Identities = 98/102 (96%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 1 TAGAGTTAATATCGTGTGGGCCAATGACCCACATACCAGATATTAAACTGATAAGAACAG 60
|||||||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 499 TAGAGTTAATATCGTGTGAGCCGATGGCCCACATATCAGATATTAAACTGATAAGAACAG 440
Query 61 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGA 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGA 398
> AT3G57770.1 | Symbols: | Protein kinase superfamily protein
| chr3:21397542-21398853 FORWARD LENGTH=1242
Length=1242
Score = 137 bits (74), Expect = 3e-32
Identities = 80/83 (96%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 24 ATGACCCACATACCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 83
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
Query 84 AAGGCCGAGAAAGGTATGAATTG 106
||||||||||||||||||| |||
Sbjct 61 AAGGCCGAGAAAGGTATGATTTG 83
> AT1G16820.1 | Symbols: | vacuolar ATP synthase catalytic subunit-related
/ V-ATPase-related / vacuolar proton pump-related
| chr1:5756835-5758464 REVERSE LENGTH=646
Length=646
Score = 137 bits (74), Expect = 3e-32
Identities = 80/83 (96%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 24 ATGACCCACATACCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 83
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
Query 84 AAGGCCGAGAAAGGTATGAATTG 106
||||||||||||||||||| |||
Sbjct 61 AAGGCCGAGAAAGGTATGAGTTG 83
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9400069063
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5