BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950484
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57880.1 | Symbols: MPS1, ATPRD2, PRD2 | multipolar spindle ... 1816 0.0
> AT5G57880.1 | Symbols: MPS1, ATPRD2, PRD2 | multipolar spindle
1 | chr5:23443977-23447244 FORWARD LENGTH=1504
Length=1504
Score = 1816 bits (983), Expect = 0.0
Identities = 1118/1182 (95%), Gaps = 13/1182 (1%)
Strand=Plus/Plus
Query 21 ATGAGTTCTCGCGTAGCTGAAGCAAATCACACGGAGAAGGAAGAGTCGCTGAGACTGGCG 80
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGAGTTCAAGCGTAGCTGAAGCAAATCACACAGAGAAGGAAGAGTCGCTGAGACTGGCA 60
Query 81 ATCGCTGTTTCTCTGCTACGATGTAAGATCCAGAATCATCAATCTTCTTCTTCTACTTCC 140
|||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 61 ATCGCTGTTTCTCTGCTACGATCTAAGTTTCAGAATCATCAATCTTCTTCTTCTACTTCC 120
Query 141 CGTTGTGATGTTCCTTCTGAATCTGATGCTCTTCGCTGGAAGCAGAAGGCTAAAGAGAGG 200
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CGTTGTTATGTTTCTTCTGAATCTGATGCACTTCGCTGGAAGCAGAAGGCTAAAGAGAGG 180
Query 201 AAGAAAGAGATTATCAGACTCCAGGAAGATCTCAAGGAAGCTGAAAGTGCTTTTCATCGT 260
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 181 AAGAAAGAGATTATCAGACTCCAGGAAGATCTCAAGGATGCTGAAAGTTCTTTTCATCGT 240
Query 261 GATTTATTCCCAGCGAATGCTTCTTGCAAGTGTTATTTCTTTGATAACTTGGGAGTATTC 320
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GACTTATTCCCAGCGAATGCTTCTTGCAAGTGTTATTTCTTTGATAACTTGGGAGTATTC 300
Query 321 AGCGGTAGGAGGATTGGAGAAGCCTCTGAATCGAGATTTAATGATGTTCTTCGTCGTAGA 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCGGTAGGAGGATTGGAGAAGCCTCTGAATCGAGATTTAATGATGTTCTTCGTCGTAGA 360
Query 381 TTTCTCAGACTAGCTTGTGTTGTCATTTTATGTTTTAGCGAGGAAAAGGAGCAGAAGGAA 440
||||||||||||||||||||||||||||||| || |||| ||| |||||||||||||||
Sbjct 361 TTTCTCAGACTAGCTTGTGTTGTCATTTTATCCTT-AGCGCGGAGAAGGAGCAGAAGGAA 419
Query 441 GTCAACTCGATCATCGCAAAGATTTCAGTCCTCTGTTTCAAACCGGAATATGAAGAGGAA 500
|| |||||||||||| |||||||| ||| |||| | || ||||| ||||||||||||
Sbjct 420 GTTAACTCGATCATCTCAAAGATTGCAGCCCTCAG----AA-CCGGATTATGAAGAGGAA 474
Query 501 GCAGAACATCTTAGGATATCTATAGATTTTCTCCTGCAACTGTCCGAAGCAGACTCCAAT 560
||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||
Sbjct 475 GCAGAACATCTTAGGATCTCTATAGATTTTCTCCTGGAACTGTCTGAAGCAGACTCCAAT 534
Query 561 GCCTCTAATTTCAGCAATTGGTCACATCAGGCTGTAGATTTCATATTAGCTTCACTGAAG 620
| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 535 GACTCTAACTTCAGCAATTGGTCACATCAGGCTGTAGATTTCATATTCGCTTCACTGAAG 594
Query 621 AAGCTGATATCGATGGGAAGGAACTTAGAATCTGTTGAAGAATCTATCAGCTTCATGATT 680
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 AAGTTAATATCGATGGGAAGGAACTTAGAATCTGTTGAAGAATCTATCAGCTTCATGATT 654
Query 681 ACACAGTTGATCACAAAAATGTGCACTCCC-TCTAAAGGAAATGAGGTGAAACAACTAGA 739
|||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct 655 ACACAGTTGATCACAAGAATGTGCACTCCCGTC-AAAGGAAATGAGGTGAAACAACTAGA 713
Query 740 AACAAGTGTTGGGTTTTATGTCCAACATTTGATCCGTAAACTTGGAAGTGAACCATACAT 799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 714 AACAAGTGTTGGGTTTTATGTCCAACATTTGATCCGTAAACTTGGAAGTGAACCATTCAT 773
Query 800 TGGACAGCGTGCAATATTTGCTATTTCTCAGAGAATATCCATTTTAGCCGAAAATTTACT 859
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 774 TGGACAGCGTGCAATCTTTGCTATTTCTCAGAGGATATCCATTTTAGCCGAAAATTTACT 833
Query 860 GTTTATGGATCCATTTGATGAATCATTCTCAGTGATGGATGAGTGCATGTTTCTACTGAT 919
||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct 834 ATTTATGGATCCATTTGATGAATCATTCCCAGAGATGGATGAGTGCATGTTTATACTGAT 893
Query 920 ACAGCTAATTGAGTTCCTGATATGTGACTATTTGTTGCCCTGGGCAGAGAATGTAGCATT 979
|||||||||||||||||| |||||||||||||||||||| ||||| || | || ||||||
Sbjct 894 ACAGCTAATTGAGTTCCTTATATGTGACTATTTGTTGCCATGGGC-GA-A-TGAAGCATT 950
Query 980 TGAAAATGTTGTGTTTGAGGAGTGGATAGCATCAGTAGT-CAATGCAAGGAAAGCAGTAA 1038
||| |||||| |||||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 951 TGACAATGTTATGTTTGAGGAGTGGATAGCATCAGTAGTACA-TGCGAGGAAAGCAGTAA 1009
Query 1039 CGGCCTTGGAAGAAAGAAATGGGTTGTATCTTCTTTACATGGACCGAGTCACAGGGGAAT 1098
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1010 AGGCCTTGGAAGAAAGAAATGGGTTGTATCTCCTTTACATGGACCGAGTCACTGGGGAAT 1069
Query 1099 TAGCTAAACGAGTTGGTCAGGTCACATCTTTCCGGGAGGTGGAGCCAGCCATTTTGGAAA 1158
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1070 TAGCTAAACGAGTTGGTCAGATCACATCTTTCCGGGAGGTGGAGCCAGCCATTTTGGACA 1129
Query 1159 AAATCTTAGCCTACCAAGAAATAGAATGATACCTTTCCAGGT 1200
||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1130 AAATCTTAGCCTACCAAGAAATAGAATGATATCTTTCCAGGT 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59286843645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5