BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950486
Length=295
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57887.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 265 2e-70
AT5G57880.1 | Symbols: MPS1, ATPRD2, PRD2 | multipolar spindle ... 145 3e-34
> AT5G57887.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23446721-23447249
FORWARD LENGTH=529
Length=529
Score = 265 bits (143), Expect = 2e-70
Identities = 255/305 (84%), Gaps = 24/305 (8%)
Strand=Plus/Plus
Query 4 CCTTATCTTAAGAGCAGAGATGGGTGACATCAAACGCTTCCTCATCCTATCAATCCTCTT 63
||||||||| | |||| ||||| ||||||||||| |||| ||||||||||| ||| ||||
Sbjct 93 CCTTATCTT-ATAGCAAAGATGCGTGACATCAAAGGCTTACTCATCCTATCGATCATCTT 151
Query 64 ACTCCTGTTCTTGTCTCAGTCTCTTCTTTTGTGTTCAGGTCTA-GGCGATGATGAAGCTG 122
||||||| ||||||||||||| ||||||||||||||||||| | | |||| | |||||||
Sbjct 152 ACTCCTGGTCTTGTCTCAGTCCCTTCTTTTGTGTTCAGGTC-ATGTCGATCACGAAGCTG 210
Query 123 GTGTGACAAGGAAGCTTGGAG-CATTCATaaaaa-aaGGCGCAAGAT-A--CGGGAGG-C 176
||||||||||||||||||||| | ||||||| | |||| |||||| | | | ||| |
Sbjct 211 GTGTGACAAGGAAGCTTGGAGTC-TTCATAAGGAGAAGG-GCAAGAAGATTCAG-AGGAC 267
Query 177 GTCCCACCACCACATCTGATTCTGCA--ACACTTTTGTCAGGCTCCTTCCATATGATTAC 234
|| | || | ||||||| ||| || |||||||||||||||||||||||||||| | |
Sbjct 268 ATCGC-CC-C-ACATCTGCTTC--CATTACACTTTTGTCAGGCTCCTTCCATATGACTGC 322
Query 235 TTGCCTTGCCACCTCT--TTCCTT-CT-TTCTCTCCTTTTCTAGGTTTCTTCTACTGTCA 290
|||||||||||||||| ||| || | |||||| |||||||||||| | |||||| |||
Sbjct 323 TTGCCTTGCCACCTCTAGTTC-TTGCAGTTCTCTTCTTTTCTAGGTTCCATCTACTATCA 381
Query 291 AAAGT 295
|||||
Sbjct 382 AAAGT 386
> AT5G57880.1 | Symbols: MPS1, ATPRD2, PRD2 | multipolar spindle
1 | chr5:23443977-23447244 FORWARD LENGTH=1504
Length=1504
Score = 145 bits (78), Expect = 3e-34
Identities = 170/210 (81%), Gaps = 23/210 (11%)
Strand=Plus/Plus
Query 99 CAGGTCTA-GGCGATGATGAAGCTGGTGTGACAAGGAAGCTTGGAG-CATTCATaa--aa 154
|||||| | | |||| | |||||||||||||||||||||||||||| | ||||||| |
Sbjct 1167 CAGGTC-ATGTCGATCACGAAGCTGGTGTGACAAGGAAGCTTGGAGTC-TTCATAAGGAG 1224
Query 155 aaaGGC--GCAAGATACGGGAGG-CGTCCCACCACCACATCTGATTCTGCA--ACACTTT 209
|| ||| | ||||| | |||| | | | || ||||||||| ||| || |||||||
Sbjct 1225 AAGGGCAAG-AAGATTC-AGAGGACAT--CGCC-CCACATCTGCTTC--CATTACACTTT 1277
Query 210 TGTCAGGCTCCTTCCATATGATTACTTGCCTTGCCACCTCT--TTCCTT-CT-TTCTCTC 265
||||||||||||||||||||| | ||||||||||||||||| ||| || | ||||||
Sbjct 1278 TGTCAGGCTCCTTCCATATGACTGCTTGCCTTGCCACCTCTAGTTC-TTGCAGTTCTCTT 1336
Query 266 CTTTTCTAGGTTTCTTCTACTGTCAAAAGT 295
|||||||||||| | |||||| ||||||||
Sbjct 1337 CTTTTCTAGGTTCCATCTACTATCAAAAGT 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13622559979
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5