BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950495
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57960.1 | Symbols: | GTP-binding protein, HflX | chr5:2346... 2687 0.0
> AT5G57960.1 | Symbols: | GTP-binding protein, HflX | chr5:23462770-23466503
REVERSE LENGTH=2008
Length=2008
Score = 2687 bits (1455), Expect = 0.0
Identities = 1598/1667 (96%), Gaps = 9/1667 (1%)
Strand=Plus/Plus
Query 3 GCTCCTTCAATCTCCACCATGAGCTCGTTTTACCTTTCTTCTTCTCCAATTTTCAAACTT 62
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 GCTCCTTCATTCTCCACCATGAGCTCGTTTTACCTTTCTTCTTCTCCAATTTTCAAACTT 64
Query 63 CAGTGGCACGCAAACGC-TAAACCTAAACCCAGTCGTCCTATTGTTTCTCTTCCA-CTCT 120
||||||||||||||| | |||||||||||||| |||| | || |||||| ||||| || |
Sbjct 65 CAGTGGCACGCAAAC-CATAAACCTAAACCCAATCGTGCAATAGTTTCTTTTCCACCT-T 122
Query 121 CTCGTCTTCATGCCAACTGCTATTCGTGGAGATTATCTTGTAACCTTACTCAACATGGTC 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 123 CTCGTCTTCATGCCAACTGCTATTCGTGGAGATTATCTTGTAACCTTGCTCAACATGGTA 182
Query 181 TCGAGTTGGAGGAAACTGTTGAGGAAGATGAAATCCCTCAAGTTCTCGAATTACCTACAG 240
| ||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||
Sbjct 183 TTGAGTTGGAGGAAACTGTGGAGGAAGATGAAATCCTTCAAGTTCTCGACTTACCAACAG 242
Query 241 AGGAGGAGCCAAATTTCGACAAGGAAACGATTGCTTCTCCATCTAAAATGTTGAGGAAGA 300
|||| || ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 243 AGGA-GA--CAAATCTCGACAACGAAACGATTGCTTCTCCATCTAAAATGTTGAGGAAGA 299
Query 301 AAAAAGGAGATGAAGAGAGCTTGGACGATAGATTCAAGCTCAGAAATGGAAAGGAGATTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAAAAGGAGATGAAGAGAGCTTGGACGATAGATTCAAGCTCAGAAATGGAAAGGAGATTT 359
Query 361 TTGAAGAGAAGGCATATCTAGTGGGCGTGGAAAGAAAGGGTGATGGAGAATGTTTGTTTA 420
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 TCGAAGAGAAGGCATATCTAGTGGGCGTGGAAAGAAAGGGTGATGGAGAATGCTTGTTTA 419
Query 421 ATATAGAGGAGTCCCTTGAGGAACTAGAACAGCTTGCGGATACTGCTGGGCTTGCAGTGG 480
|||| ||||| || |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 420 ATATTGAGGAATCTCTTGAGGAGCTAGAACAACTTGCGGATACTGCTGGGCTTGCAGTGG 479
Query 481 TTGGTTCTACTTATCAAAAGCTTGCGTCCCCAAATCCTAGAACATACATTGGATCAGGAA 540
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 480 TTGGTTCTACTTATCAAAAGCTAGCTTCCCCAAATCCTAGAACATACATTGGATCAGGAA 539
Query 541 AGGTCGCAGAGATAAAAAGTGCTATTAATGCATTGGACGTTGAGACCGTGATATTTGACG 600
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 540 AGGTCGCAGAGATAAAAAGTGCAATTAATGCTTTGGACGTTGAGACTGTGATATTTGACG 599
Query 601 ATGAACTTTCACCTGGGCAATTGCGTAACCTGGAAAAGGCCTTTGGTGGGGATGTTCGAG 660
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATGAACTTTCACCAGGGCAATTGCGTAACCTGGAAAAGGCCTTTGGTGGGGATGTTCGAG 659
Query 661 TTTGTGACCGCACCGCCCTTATCTTGGACATTTTTAACCAAAGGGCTGCAACTCATGAAG 720
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 660 TTTGTGACCGCACCGCCCTTATCTTGGACATTTTCAACCAAAGGGCCGCAACTCATGAAG 719
Query 721 CAGCCTTGCAGGTTGCTCTAGCACAAATGGAGTACCAGTTACCACGATTAACTAGAATGT 780
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 720 CAGCCTTGCAGGTTGCTCTAGCACAAATGGAGTACCAGTTGCCACGATTAACTAGAATGT 779
Query 781 GGACTCACCTTGAGCGTCAATCTGGTGGACAAGTTAAGGGCATGGGAGAAAAACAAATTG 840
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 780 GGACTCATCTTGAGCGTCAATCTGGTGGCCAAGTTAAGGGTATGGGAGAAAAACAAATTG 839
Query 841 AAGTTGATAAGCGAATCTTGCGGACTCAAATTGGAGTTCTCAAAAAGGAGTTGGAATCTG 900
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 840 AAGTTGATAAGCGAATCTTGCGTACTCAAATTGGAGTTCTCAAAAAGGAGTTGGAATCTG 899
Query 901 TAAGAAAGCACCGAAAGCAGTATAGAAGCCGGCGTGTTGCTATACCAGTACCTGTTGTAT 960
|||||||||| || ||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 900 TAAGAAAGCATCGGAAGCAGTATAGAAGCAGGCGTGTTGCTATACCTGTACCTGTTGTAT 959
Query 961 CTTTGGTTGGTTACACAAACGCTGGAAAGAGTACACTATTAAACCAATTGACTGGTGCTA 1020
| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 960 CCTTGGTCGGTTACACAAACGCTGGAAAGAGTACACTATTGAACCAATTGACTGGTGCTA 1019
Query 1021 ATGTTCTCGCTGAAAATCGTTTGTTTGCGACTCTTGATCCAACTACGAGAAGGGTTCAGA 1080
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1020 ATGTTCTCGCTGAAAATCGTTTGTTTGCAACTCTTGATCCAACTACGAGAAGGGTTCAGA 1079
Query 1081 TGCAAAACGGGAAGGAATTTCTTCTCACAGATACTGTTGGTTTTATCCAAAAGTTACCAA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGCAAAACGGGAAGGAATTTCTTCTCACAGATACTGTTGGTTTTATCCAAAAGTTACCAA 1139
Query 1141 CCACCCTGGTTGCTGCTTTCAGAGCAACACTTGAAGAAATAGCAGAGTCAAGCCTTTTGG 1200
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CCACTCTGGTTGCTGCTTTCAGAGCAACACTTGAAGAAATAGCAGAGTCAAGCCTTTTGG 1199
Query 1201 TGCATGTTGTTGACATCAGCCACCCACTGGCAGAGCAACAAATAGAAGCTGTGGAAAAGG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1200 TGCATGTTGTTGACATCAGCCACCCACTGGCAGAGCAACAAATAGAAGCTGTGGAGAAGG 1259
Query 1261 TTATGTCTGAACTCGACGTTTCATCAATTCCAAAGTTGGTCGTGTGGAATAAGGTTGATA 1320
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1260 TTATGTCTGAACTCGACGTTTCATCAATTCCAAAATTGGTCGTGTGGAATAAGGTTGATA 1319
Query 1321 GAGTGGATGATCCTCAAAAGGTCAAGCTGGAAGCAGAG-AAGAGTGGGGATACAATTTGT 1379
|||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 1320 GAGTGGATGATCCTCAAAAGGTCAAGCTGGAAGCAGAGGAA-ACTGGGGATACAATTTGT 1378
Query 1380 ATATCTGCTCTGACTGGAGAAGGACTAGATGACTTCTGCAATGCTGTTCATGAGAAGCTC 1439
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1379 ATATCTGCTCTGACTGGAGAAGGACTAGACGACTTCTGCAATGCTGTTCATGAGAAGCTC 1438
Query 1440 AAGGATTCAATGGTTTGGGTTGAAGCCCTTTTGCCTTTTGATAAGGGGGACCTTCTAAGC 1499
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1439 AAGGATTCAATGGTTTGGGTTGAAGCCCTTTTGCCATTTGATAAAGGGGACCTTCTAAGC 1498
Query 1500 ACCATACACAAGGTTGGAATGGTGAAAGAAACTGAATATACAGAGAATGGGACGCTCATC 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1499 ACCATACACAAGGTTGGAATGGTGAAAGAAACTGAATATACAGAGAATGGGACACTTATC 1558
Query 1560 AGGGCTCATGTTCCACTTCGTTTTGCACAGCTGCTTAAACCTATGAGACACTTGGTCAAA 1619
||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 AGGGCACACGTTCCGCTACGTTTTGCACAGCTGCTTAAACCTATGAGACACTTGGTCAAA 1618
Query 1620 GATACTTCCATAAGCCAAAAAGGGTGAAGCAGAATCATAGCAAGAAC 1666
|||||||| |||||||||| ||| |||| ||||||||||||||||||
Sbjct 1619 GATACTTCAATAAGCCAAAGAGGATGAACCAGAATCATAGCAAGAAC 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82328893800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5