BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950504
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58030.1 | Symbols: | Transport protein particle (TRAPP) co... 1105 0.0
> AT5G58030.1 | Symbols: | Transport protein particle (TRAPP)
component | chr5:23486777-23488620 REVERSE LENGTH=969
Length=969
Score = 1105 bits (598), Expect = 0.0
Identities = 646/670 (96%), Gaps = 0/670 (0%)
Strand=Plus/Plus
Query 1 CTCACCGGAGAATCGAAAAAGATGATCGGAGTCGGGAAAATGAAACAGTACTCCAACGTC 60
||||||||| || |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 117 CTCACCGGAAAACCGAAGAATATGATCGGAGTCGGGAAAATGAAACAGTACTCCAACGTC 176
Query 61 CTTGACAAGCCTCTTAGCAAAGGCAAGCAAGAGGTGAGCTTGACCGCATTTGCTTTCTTA 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CTTGACAAGCCTCTCAGCAAAGGCAAGCAAGAGGTGAGCTTGACCGCATTTGCTTTCTTA 236
Query 121 TTCTCGGAGCTCGTTCAGTACAATCAAACCCAGGTTGACAATATAGCTGAACTGGAAAGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 237 TTCTCGGAGCTCGTTCAGTACAATCAAACCCAGGTTGACAATATAGCTGAACTTGAAAGA 296
Query 181 AGACTAGAGGATGCTGGGTATGCAGTTGGATCTCGAGTTCTGGAGCTTCTTTGCAACCGG 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 297 AGACTAGAGGATGCTGGGTATGCAGTTGGATCTCGAGTTCTAGAGCTTCTTTGCAACCGG 356
Query 241 GAGAAGGGCAACAGAAGAGAGACACGGTTACTGGGAATTCTGTCTTTCGTCCACAGTACT 300
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 357 GAAAAGGGAAACAGAAGAGAGACACGGTTACTGGGAATTCTGTCTTTCGTTCACAGTACT 416
Query 301 GTGTGGAAGGTGTTGTTTGGGAAGGTTGCTGATTCACTTGAAAAAGGAACAGAACATGAA 360
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 417 GTGTGGAAAGTGTTGTTTGGAAAGGTTGCTGATTCACTTGAAAAAGGAACAGAACATGAA 476
Query 361 GATGAGTACATGATCAGTGAAAAGGAGCTTCTCGTCAACAGGTTCATTTCGATCCCAAAA 420
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 477 GATGAGTACATGATCAGTGAAAAGGAGCTTCTTGTTAACAGGTTCATTTCGATTCCAAAA 536
Query 421 GACATGGGAACATTCAACTGCGGGGCGTTTGTGGCCGGCATAGTGAAGGGAGTTCTGGAT 480
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 537 GACATGGGAACATTCAACTGCGGAGCGTTTGTTGCTGGCATAGTGAAGGGAGTTCTGGAT 596
Query 481 AACGCAGGGTTTCCTGCTGTGGTAACGGCTCATTTTGTACCCATTGAAGGACAACAACGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AACGCAGGGTTTCCTGCTGTGGTAACGGCTCATTTTGTACCCATTGAAGGACAACAACGT 656
Query 541 CCTCGGACTACTATTTTGATCAAGTTTGCTGATGAGGTGCTTAAAAGAGAGGCACGGCTA 600
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 657 CCTCGAACTACTATTTTGATCAAGTTTGCTGATGAGGTGCTTAAGAGAGAGGCACGGCTA 716
Query 601 AGCCAATGAGAGCGCTATGGTCACGAGTTGCCACGATCTGGGAACTATTGGCTTTATGTG 660
|||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 717 AGCCAATGAGAGTACTATGGTCACGAGTTTCCACGATCTGGAAACTATTGGCTTTATGTG 776
Query 661 AACTGCTTGT 670
||||||||||
Sbjct 777 AACTGCTTGT 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32401024815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5