BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950510

Length=1378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G58080.1 | Symbols: ARR18, RR18 | response regulator 18 | ch...   239    6e-62


> AT5G58080.1 | Symbols: ARR18, RR18 | response regulator 18 | 
chr5:23501785-23504143 REVERSE LENGTH=1901
Length=1901

 Score =  239 bits (129),  Expect = 6e-62
 Identities = 230/277 (83%), Gaps = 14/277 (5%)
 Strand=Plus/Plus

Query  82   ATGAAGATGATAGTGACAGAAAAGAAGAAGATGGTAAGGGGAATGAACACAATGGT-ATG  140
            |||||||||| ||||||||| |||| || |||||| |||||| ||||||  ||||| | |
Sbjct  496  ATGAAGATGACAGTGACAGAGAAGAGGATGATGGTGAGGGGAGTGAACAGGATGGTGACG  555

Query  141  GAGTCATGTAC-CCGAATGAAG---CGTACCGTTTGGACAGTGGAGCTCCACCAGAAGTT  196
            | |||| |||| | ||| ||||   |||   |||||| |   |||||| |||||||||||
Sbjct  556  G-GTCAGGTACGCGGAA-GAAGCCACGTGTTGTTTGGTCTCAGGAGCTTCACCAGAAGTT  613

Query  197  TGTCAATGCTGTTCAGCAATTGGGAGGCGTCGACAAGGCT-TCTCCTGAACAAATACATG  255
            ||||| ||| |||||||||||  | ||| ||||||||||| | |||  || |||||| ||
Sbjct  614  TGTCAGTGCCGTTCAGCAATT--G-GGCCTCGACAAGGCTGT-TCCCAAAAAAATACTTG  669

Query  256  CTCTCATGAATGTAGAAGGTCTC-CCAGTGATAAATGTAGCCAGCCATTTGCAGAAGTAC  314
             |||||||| | ||||||||||| | || || ||| |||||||| |||||||||||||||
Sbjct  670  ATCTCATGAGTATAGAAGGTCTCACTAGGGA-AAACGTAGCCAGTCATTTGCAGAAGTAC  728

Query  315  AGACTGTACTTGAAAAAGATAGACGAAGGTCAGCAGC  351
            |||||||||||||||||||||||||||||||||||||
Sbjct  729  AGACTGTACTTGAAAAAGATAGACGAAGGTCAGCAGC  765


 Score =  191 bits (103),  Expect = 2e-47
 Identities = 143/162 (88%), Gaps = 4/162 (2%)
 Strand=Plus/Plus

Query  421   ACTGCTCCAGCTTCATCCAACAGGGGCATCACCAGAACTCAAGCAACTCAGCTAATCCAT  480
             ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct  946   ACTCCTCCAGCTTCATCCAACAGGGGCATCACCAGAACTCAAGCAATTCAGCTAATCCGT  1005

Query  481   CTGAAACATATCACACTACTCTGTCACCAAGAGTCCAGAAAGTGAATAC-GTTTCAACCA  539
              || ||||||||||| |||||||||||||||| ||||||| |||||| | |||||| | |
Sbjct  1006  TTGGAACATATCACAGTACTCTGTCACCAAGAATCCAGAACGTGAAT-CTGTTTCAGCGA  1064

Query  540   AGTTCATCTCCACTA-AAGCCCCTATTGTTTCCTAAAAGCAA  580
             | ||||||||||||| || |||||   |||||||| ||||||
Sbjct  1065  ACTTCATCTCCACTAGAA-CCCCTCCAGTTTCCTAGAAGCAA  1105



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 67871136840


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5