BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950512
Length=2878
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58100.1 | Symbols: | unknown protein; INVOLVED IN: pollen ... 4822 0.0
> AT5G58100.1 | Symbols: | unknown protein; INVOLVED IN: pollen
exine formation; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 8 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G28720.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr5:23507654-23515020 FORWARD LENGTH=3169
Length=3169
Score = 4822 bits (2611), Expect = 0.0
Identities = 2784/2869 (97%), Gaps = 5/2869 (0%)
Strand=Plus/Plus
Query 1 agaagaagaagaagaagaCGATGAGCAGATTCGGGGCTGGGAACAGATCCGTTTCCAAGC 60
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 155 AGAAGAAGAAGAAGAAGACGATGCGGAGATTCGGGGCTGGGAACAGATCCGTTTCCAAGC 214
Query 61 TCGTATTCACCATTTGTGTTGCTATCCTGTTCATACCATCTCTATCATATGGAGCTTCAC 120
||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 215 TCGTACTCACCATTTGTGTAGCTATCCTGTTCATACCATCTCTATCGTATGGAGCTTCAC 274
Query 121 ATGGAAACCGTAAGACGGCGAAGTCTTCTGTATTTTCCTTGTTCAATCTTAGGGACAAAA 180
| || ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 275 AAGGGAACCGGAAGACGGCGAAGTCTTCTGTGTTTTCCTTGTTCAATCTTAGGGATAAAA 334
Query 181 GCAGATTTTGGAGCGAGTCTGTCTTTCGTACCGATTTTGATGATTTGGAGTCTTCGGTTC 240
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 335 GCAGATTTTGGAGCGAGTCTGTTTTTCGTACTGATTTTGATGATTTGGAGTCTTCCGTTC 394
Query 241 ACTCGAATTCTGGTGTGCTGAATTACACTAAGTCAGGAAATATTGCGAGTTACTTAGAGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 ACTCGAATTCTGGTGTGCTGAATTACACTAAGTCAGGAAATATTGCGAGTTACTTAGAGC 454
Query 301 TTATGGAAGTCGATTCTGTCTATCTTCCCGTGCCAGTTAATTTTATTTTCATAGGGTTTG 360
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 455 TTATGGAAGTCGATTCTGTCTATCTTCCAGTGCCAGTTAATTTTATCTTCATAGGGTTTG 514
Query 361 AAGGAAAAGGAAACCAAGACTTCAAACTCCGTCCCGAGGAACTTGAGCGTTGGTTTAATA 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 AAGGAAAAGGGAACCAAGACTTCAAACTCCGTCCCGAGGAACTTGAGCGTTGGTTTAATA 574
Query 421 AACTTGATCACATGTTTGAACATACACGAGTTCCACAAATCAAAGAAGTTCTCAATCCCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 AACTTGATCACATGTTTGAACATACACGAGTTCCACAAATCAAAGAAGTTCTCAATCCCT 634
Query 481 TTTACAAGATTAACATTGAAAAGGAGGTGAAGCACCATCTTCCTATCATCAGTCGCGTGA 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 635 TTTACAAGATTAACATTGAAAAGGAGGTGCAGCACCATCTTCCTATCATCAGTCGCGTGA 694
Query 541 ACTACAACTTTTCTGTTCATGCTATACAAATGGGAGAAAAGGTGACATCAGTAATTGAAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 ACTACAACTTTTCTGTTCATGCTATACAAATGGGAGAAAAGGTGACATCAGTAATTGAAC 754
Query 601 GCGCAATCAAAGTTTTAGCTCGCAAAGATGATGTGTCTACCAATAAAGATGAGGAAAGTG 660
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 755 ACGCAATCAAAGTTTTAGCTCGCAAAGATGATGTGGCTACCAATAAAGATGAGGAAAGTG 814
Query 661 CTCTATTGCAAGTGGATGTTGAGATGATGGAATTCATTTTCACTAGCCTTGTCGAATATT 720
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTCTACTGCAAGTGGATGCTGAGATGATGGAATTCATTTTCACTAGCCTTGTCGAATATT 874
Query 721 TCCATCTCGAGGATGCATACAACGTATTTGTTTTGAATCCCAAACACGATAACAAAAAAG 780
| ||||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||
Sbjct 875 TTCATCTCGAGGATGCATACAACCTTTTTATTTTGAATCCCAAGCACGATAACAAAAAAG 934
Query 781 CCAGATATGGATACCGGAGAGGGTTTTCAGAGTCAGAGTTATCTTATCTGAAAGAGAACA 840
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 935 CCAAATATGGATACCGGAGAGGGTTTTCAGAGTCAGAGATATCTTATCTGAAAGAGAACA 994
Query 841 AGGAAATACTTAAAAAA-CTTCTTCAGTCTGGAAAACCGTCAGAAAATATTTTAGCATTT 899
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 AGGAAATAC-TAAAAAATCTTCTTCAGTCTGGAAAACCGTCAGAAAATATTTTAGCATTT 1053
Query 900 GATATGGTGAGGAAGCCATTGTACGACAGACATCCAATGCTGAAATTTTCCTGGACAAAT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 GATATGGTGAGGAAGCCATTGTACGACAGACATCCAATGCTGAAATTTTCCTGGACAAAT 1113
Query 960 GCAGAGGAGACTGATACGGCTGAGTGGTTTAATGCATGCCAGGATGCTCTTAACAAGTTG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 GCAGAGGAGACTGATACGGCTGAGTGGTTTAATGCATGCCAGGATGCTCTTAACAAGTTG 1173
Query 1020 GAACAGCTATCTCTTGGTAAAGATGCAGCCGAACTCATTCAGAGTAAGGTTTTGCAGTTG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 GAACAGCTATCTCTTGGTAAAGATGCAGCCGAACTCATTCAGAGTAAGGTTTTGCAGTTG 1233
Query 1080 CTTAGAGGGAAAAATGAAGATATGAAGGTGTTTCTAGAGAAGGATTTAAAAGCTGGAGAC 1139
|||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1234 CTTAGAGGAAAAAATGAAGATATGAAGGTGTTCCTAGAGAAGGATTTAAGAGCTGGAGAC 1293
Query 1140 TTTGGCAATCTTAACGCAGAATGTCTGACTGATATCTGGATCGGAAAGGGCAGGTGGGCA 1199
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 TTTAGCAATCTTAACGCAGAATGTCTGACTGATATCTGGATCGGAAAGGGCAGGTGGGCA 1353
Query 1200 TTTATCGACTTAACTGCTGGCCCTTTTTCATGGGGACCTTCTGTCGGTGGGGAAGGAGTG 1259
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 TTTATCGATTTAACTGCTGGCCCTTTTTCATGGGGACCTTCTGTCGGTGGGGAAGGAGTG 1413
Query 1260 CGAACCGAACTTAGTTTGCCAAATGTGGGAAAGACTATTGGTGCAGTTGCAGAAATATCT 1319
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1414 CGAACCGAACTTAGTTTGCCAAATGTGGGAACGACTATTGGTGCAGTTGCAGAAATTTCT 1473
Query 1320 GAAGATGAAGCAGAAGACAAACTGCAAGCTGCAATTCAGGATAAATTTTCTGTATTTGGA 1379
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1474 GAAGATGAAGCAGAAGACAAACTGCAAACTGCAATTCAGGATAAATTTTCTGTATTTGGA 1533
Query 1380 GAGAATGACCATCAGGCTGTTGACATTCTTCTAGCGGAGATTGATGTATATGAACTATTT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 GAGAATGACCATCAGGCTGTTGACATTCTTCTAGCGGAGATTGATGTATATGAACTATTT 1593
Query 1440 GCTTTCAAGCACTGCAAGGGAAGGAAAGTGAAGCTTGCTCTTTGTGAAGAACTTGATGAA 1499
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1594 GCTTTCAAGCACTGCAAGGGAAGGAAGGTGAAGCTTGCTCTTTGTGAAGAACTTGATGAA 1653
Query 1500 AGAATGCGGGATCTAAAAACCGAGCTCCAGTCATTTGACGGAGAGGAATATGATGAGACT 1559
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1654 AGAATGCGGGATTTAAAGACCGAGCTCCAGTCATTTGACGGAGAGGAATATGATGAGACT 1713
Query 1560 CACAAGAGAAAAGCCATGGATGCACTAAGACGAATGGAGAGCTGGAATTTGTTTAGTGAT 1619
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1714 CATAAGAGAAAAGCCATGGATGCACTAAGACGAATGGAGAGCTGGAACTTGTTTAGTGAT 1773
Query 1620 GAACATGAGGAGTTCCAAAATTACACAGTTGCACGCGATACTTTCCTTGCACATTTAGGT 1679
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774 GAACGTGAGGAGTTCCAAAATTACACAGTTGCACGCGATACTTTCCTTGCACATTTAGGT 1833
Query 1680 GCTACTCTCTGGGGATCCATGAGACATATAGTATCCCCCTCAGTTGCTGATGGTGCATTT 1739
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1834 GCTACTCTCTGGGGATCCATGAGACATATAATATCCCCATCAGTTGCTGATGGTGCATTT 1893
Query 1740 CATCATTATGAGAAGATCTCTTTTCAGCTTATCTTCATCACCCAAGAGAAAGTTCGACAA 1799
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1894 CATCATTATGAGAAGATCTCTTTTCAGCTTGTCTTCATCACCCAAGAGAAAGTTCGACAA 1953
Query 1800 ATCAAACAGCTGCCGGTGGATCTCAAGGCCCTCATGGATGGGCTTTCTTCGCTGTTGTTG 1859
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1954 ATCAAACAGCTACCGGTGGATCTCAAGGCCCTCATGGATGGGCTTTCTTCGCTGTTGTTA 2013
Query 1860 CCTTCTCAGAAGCCTATGTTCAGCCAGCATATGTTAACACTCTCTGAGGATCCTGCATTG 1919
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2014 CCTTCTCAGAAGCCTTTGTTCAGCCAGCATATGTTAACACTCTCTGAGGATCCTGCATTG 2073
Query 1920 GCTATGGCTTTTTCAGTAGCCCGAAGGGCAGCAGCTGTCCCTCTATTGCTTGTCAATGGA 1979
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 2074 GCTATGGCTTTTTCAGTGGCACGAAGGGCAGCAGCTGTCCCTCTATTACTTGTCAATGGA 2133
Query 1980 ACTTACCGGAAGACTGTTCGTTCATATCTTGATTCATCAATCCTCCAGTACCAATTACAG 2039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2134 ACTTACCGGAAGACTGTTCGTTCATATCTTGATTCATCAATCCTCCAGTACCAATTACAG 2193
Query 2040 AGGGTGAACGATCACACTTCCCTTAAAGGAGGTCATGCCCACAGCAGGTCCACTCTTGAA 2099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2194 AGGGTGAACGATCACACTTCCCTTAAAGGAGGTCATGCCCACAGCAGGTCCACTCTTGAA 2253
Query 2100 ATTCCTATCTTTTGGCTCATCAGTGGTGATCCACTGCTGATTGACAAGCATTATCAAGCA 2159
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2254 ATTCCTATCTTTTGGCTCATCAGTGGTGATCCGCTACTGATTGACAAGCATTATCAAGCA 2313
Query 2160 AAGGCGCTTTCAAACATGGTTGTTGTTGTTCAGTCGGAGGCATCTTCATGGGAGAGCCAT 2219
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2314 AAGGCGCTTTCGAACATGGTTGTTGTTGTTCAGTCGGAGGCCTCTTCATGGGAGAGCCAT 2373
Query 2220 TTGCAATGCAACGGGCGATCACTGTTATGGGATCTAAGGAGCCCCGTGAAAGCAGCCATG 2279
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2374 TTGCAATGCAACGGGCGATCACTATTATGGGATCTGAGGAGCCCCGTGAAAGCAGCCATG 2433
Query 2280 GCTTCTGTTGCTGAACATCTAGCCGGATTGCTTCCTCTTCATCTCGTCTACAGTGTAGCG 2339
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2434 GCTTCTGTTGCTGAACATCTAGCTGGATTGCTTCCTCTTCATCTTGTCTACAGTGTAGCT 2493
Query 2340 CATGAAAGTGCAATTGAGGACTGGACATGGTCAGTAGGTTGCAATCCCTTTTCCGTCACT 2399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2494 CATGAAAGTGCAATTGAGGACTGGACATGGTCAGTAGGTTGCAATCCCTTTTCCGTCACT 2553
Query 2400 TCTCAAGGTTGGCTCCTTTCACAGTTTCAATCTGACACAATTGCCCGGAGTTATATGATT 2459
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2554 TCTCAAGGTTGGCTCCTTTCACAGTTTCAATCTGACACAATTGCCCGGAGCTATATGATT 2613
Query 2460 ACGGCGCTTGAAGAATCAATACAAGCAGTCAATTCAGGGATCCATCTTCTGCGGCTGGAG 2519
|| ||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||||
Sbjct 2614 ACAGCGCTTGAAGAATCAATACAAGCTGTCAATTCTGGGATTCATCTTTTGCGGCTGGAG 2673
Query 2520 AGAACGAATaaaaaaaCGTTTAAGCTCTTCCAATCAAGGGAACGTGAGCTGATGAACAAG 2579
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2674 AGAACGAATAAAAAGACGTTTAAGCTCTTCCAATCAAGGGAACGTGAGCTGATGAACAAG 2733
Query 2580 TACAAGTACGTGGTTAGCCTGTGGAGACGACTTTCGAATGTTGCGGGAGAAACACGATAT 2639
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 2734 TACAAGTACGTGGTTAGCCTGTGGAGACGACTTTCGAATGTTGCTGGAGAAACACGCTAT 2793
Query 2640 GGGGATGCCATGAGATTTCTGCATACCTTAGAAGAAGCTACTAGCTCATTCGTAAGGGAA 2699
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 2794 GGGGATGCCATGAGATTTCTGCATACCTTAGAGGAAGCTACTAGCTCATTTGTAAGAGAA 2853
Query 2700 GTGAATGCAACAGTGGGGGTTTTGCATCCAATTCACTGCACAAAAGAGAGGAAGGTGAAA 2759
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2854 GTGAATGCAACAGTGGGTGTTTTGCACCCAATTCACTGCACAAAAGAGAGGAAGGTGAAA 2913
Query 2760 GTAGAAGTGGACATGACCACAATTCCTGCCTTTATCATAGTTTTGATTCTT-CTTTACGC 2818
|| |||||||||||||| ||||| ||||||||||||||||| ||||| || ||||||||
Sbjct 2914 GTGGAAGTGGACATGACAACAATACCTGCCTTTATCATAGTACTGATT-TTACTTTACGC 2972
Query 2819 TGTCTTAAGGCCAAGAGCTCCTAAGCCAAAGATTAACTGATGTCTAAAA 2867
||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 2973 TGTCTTAAGGCCAAGAGCTCCTAAGCCAAAGATCAACTGATGTC-AAAA 3020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143025954493
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5