BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950519
Length=644
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58180.1 | Symbols: ATYKT62, YKT62 | Synaptobrevin family pr... 942 0.0
AT5G58060.2 | Symbols: YKT61, ATYKT61, ATGP1 | SNARE-like super... 418 3e-116
AT5G58070.1 | Symbols: ATTIL, TIL | temperature-induced lipocal... 67.6 1e-10
> AT5G58180.1 | Symbols: ATYKT62, YKT62 | Synaptobrevin family
protein | chr5:23544011-23545760 FORWARD LENGTH=852
Length=852
Score = 942 bits (510), Expect = 0.0
Identities = 586/623 (94%), Gaps = 4/623 (1%)
Strand=Plus/Plus
Query 24 ATGAAGATCACTGCCTTGCTCGTTCTCAAGTGCGATCCCGAAACTCCCGAACCAGTTATC 83
|||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 1 ATGAAGATCACTGCCTTGCTCGTTCTCAAGTGCGATCCCGAAACACGCGAACCCGTTATC 60
Query 84 CTGGCCAACGTCTCCGACCTCTCACAATTCGGAAAATTCAATTTCTATCGCTCTAACTTG 143
||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 61 CTGGCCAACGTTTCCGACCTCTCACAATTCGGAAAATTCTCTTTTTATCGCTCTAACTTC 120
Query 144 GAAGAGTTCATTGTATTCATTGCCAGTACTGTCGCCA-AACGAACCCCTCCTGGTCAGTG 202
|||||||||||||||||||||||| ||||||| |||| || |||||||||| |||||| |
Sbjct 121 GAAGAGTTCATTGTATTCATTGCCCGTACTGTTGCCAGAA-GAACCCCTCCAGGTCAGCG 179
Query 203 CCAATCCGTCAAACACGAAGAGTATAAAGTGCACGCTTACAACATAAATCCCCTCTGCGC 262
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 180 CCAATCCGTCAAACACGAAGAGTATAAAGTGCACGCTTACAACATAAATGGCCTCTGCGC 239
Query 263 CGTAGGATTCATGGACGACCATTATCCCGTTCGAAGTGCCTTTTCCCTTCTCAACCAGGT 322
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 240 CGTAGGATTCATGGACGACCATTATCCCGTTCGAAGTGCCTTTTCTCTTCTCAATCAGGT 299
Query 323 ATTAGATGCGTACCGGAAGGATTTTGGTGACACATGGAGGTCTGCAAACTCTAGTCAGCC 382
|||||||| |||| |||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 300 ATTAGATGTATACCAGAAGGATTATGGTGACACATGGAGGTTTGAAAACTCTAGTCAGCC 359
Query 383 GTGGCCATACTTAAAAGAGGCTTTAGA-AATATTTCAGGACCCGGCAGAAGCTGATAAGC 441
|||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||||||
Sbjct 360 GTGGCCATACTTAAAAGAAGCTTCAGACAA-ATTTCGGGACCCGGCAGAAGCTGATAAGC 418
Query 442 TGTTGAAAATCCAGAGGGAATTGGATGAGACCAAGATTATCCTTCATAAAACCATTGATG 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGTTGAAAATCCAGAGGGAATTGGATGAGACCAAGATTATCCTTCATAAAACCATTGATG 478
Query 502 GTGTCCTTGACCGAGGTGAGAAGCTGGACAGCTTAGTGGAGAAGAGCTCAGATTTGAGCA 561
||||||| | ||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 479 GTGTCCTAGCCCGAGGTGAAAAGCTGGACAGCTTAGTGGAGAAGAGCTCAGAGTTAAGCC 538
Query 562 TGGCATCGAAGATGTTTTACAAGCAAGCGAAGAAAACAAACTCTTGTTGTACACTTCTCT 621
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 TGGCATCGAAGATGTTTTACAAGCAAGCGAAGAAAACAAACTCATGTTGTACACTTCTCT 598
Query 622 AAGCTGCAATGCAACTCTTGAAT 644
|||||| ||||||||||||||||
Sbjct 599 AAGCTGTAATGCAACTCTTGAAT 621
> AT5G58060.2 | Symbols: YKT61, ATYKT61, ATGP1 | SNARE-like superfamily
protein | chr5:23498139-23500384 FORWARD LENGTH=1060
Length=1060
Score = 418 bits (226), Expect = 3e-116
Identities = 349/406 (86%), Gaps = 18/406 (4%)
Strand=Plus/Plus
Query 234 CACGCTTACAACATAAATCCCCTCTGCGCCGTAGGATTCATGGACGACCATTATCCC-GT 292
||||||||||| | |||| ||| ||||| || || ||||||||||| ||||| ||| ||
Sbjct 409 CACGCTTACAATAGAAATGGCCTTTGCGCGGTGGGTTTCATGGACGATCATTA-CCCTGT 467
Query 293 TCGAAGTGCCTTT-TCCCTTCTCAACCAGGTATTAGATGCGTACCGGAAGGA-TTTTGGT 350
|||||||| |||| || |||||||| ||||| |||||| ||||| ||| || |||||||
Sbjct 468 TCGAAGTG-CTTTCTCTCTTCTCAATCAGGTCCTAGATGAGTACCAGAA-GAGTTTTGGT 525
Query 351 GACACATGGAGGTCTGC-----AA-ACTCTAGTCAGCCGTGGCCATACTTAAAAGAGGCT 404
|| ||||||||||||| || |||| | |||||| ||||||||||||| || |||
Sbjct 526 GAGTCATGGAGGTCTGCAAAAGAAGACTCCAATCAGCCTTGGCCATACTTAACCGAAGCT 585
Query 405 TTAGAA-ATATTTCAGGACCCGGCAGAAGCTGATAAGCTGTTGAAAATCCAGAGGGAATT 463
||| || | |||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 586 TTA-AACAAATTTCAGGACCCAGCAGAGGCTGATAAGCTGTTGAAAATCCAGAGGGAGTT 644
Query 464 GGATGAGACCAAGATTATCCTTCATAAAACCATTGATGGTGTCCTTGACCGAGGTGAGAA 523
||||||||| ||||||||||||||||||||||||||| |||| || | ||| ||||||||
Sbjct 645 GGATGAGACAAAGATTATCCTTCATAAAACCATTGATAGTGTTCTAGCCCGTGGTGAGAA 704
Query 524 GCTGGACAGCTTAGTGGAGAAGAGCTCAGATTTGAGCATGGCATCGA-AGATGTTTTACA 582
|||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 705 GCTGGACAGCCTAGTGGAGAAGAGCTCAGATTTGAGCATGGCATC-ACAGATGTTTTACA 763
Query 583 AGCAAGCGAAGAAAACAAACTCTTGTTGTAC-ACTTCTCTAAGCTG 627
||||||||||||||||||| || || ||||| | |||| | |||||
Sbjct 764 AGCAAGCGAAGAAAACAAATTCATGCTGTACTA-TTCTGTGAGCTG 808
> AT5G58070.1 | Symbols: ATTIL, TIL | temperature-induced lipocalin
| chr5:23500061-23501209 REVERSE LENGTH=1065
Length=1065
Score = 67.6 bits (36), Expect = 1e-10
Identities = 51/58 (88%), Gaps = 2/58 (3%)
Strand=Plus/Minus
Query 571 AGATGTTTTACAAGCAAGCGAAGAAAACAAACTCTTGTTGTAC-ACTTCTCTAAGCTG 627
||||||||||||||||||||||||||||||| || || ||||| | |||| | |||||
Sbjct 1050 AGATGTTTTACAAGCAAGCGAAGAAAACAAATTCATGCTGTACTA-TTCTGTGAGCTG 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31094936993
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5