BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950520
Length=475
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58180.1 | Symbols: ATYKT62, YKT62 | Synaptobrevin family pr... 422 2e-117
AT5G58060.2 | Symbols: YKT61, ATYKT61, ATGP1 | SNARE-like super... 113 1e-24
AT5G58070.1 | Symbols: ATTIL, TIL | temperature-induced lipocal... 78.7 5e-14
> AT5G58180.1 | Symbols: ATYKT62, YKT62 | Synaptobrevin family
protein | chr5:23544011-23545760 FORWARD LENGTH=852
Length=852
Score = 422 bits (228), Expect = 2e-117
Identities = 280/304 (92%), Gaps = 7/304 (2%)
Strand=Plus/Plus
Query 21 ATGAAGATCACTGCCTTGCTCGTTCTCAAATGCGATCCCAAAACACCCAAACCAGTTATC 80
||||||||||||||||||||||||||||| ||||||||| |||||| | |||| ||||||
Sbjct 1 ATGAAGATCACTGCCTTGCTCGTTCTCAAGTGCGATCCCGAAACACGCGAACCCGTTATC 60
Query 81 CTGGCCAACGTTTCCAACCTCTTACAATTC-GAAATATGCACTTTCTATCGCTCTAACTT 139
||||||||||||||| |||||| ||||||| |||| || | |||| ||||||||||||||
Sbjct 61 CTGGCCAACGTTTCCGACCTCTCACAATTCGGAAA-ATTCTCTTTTTATCGCTCTAACTT 119
Query 140 GGAAGAGTTCATCGTATTCATTGCCCGTACTGTCGCCA-AACGAACCCCTCCTGGTCAGT 198
||||||||||| |||||||||||||||||||| |||| || |||||||||| ||||||
Sbjct 120 CGAAGAGTTCATTGTATTCATTGCCCGTACTGTTGCCAGAA-GAACCCCTCCAGGTCAGC 178
Query 199 G-CAACTCCGTCAAACACGAAGAGTATAAAGTGCACGCTTACAACATAAATGGCCTCTGT 257
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GCCAA-TCCGTCAAACACGAAGAGTATAAAGTGCACGCTTACAACATAAATGGCCTCTGC 237
Query 258 GCCGTAGGATTCATGGACGACCATTATCCCGTTCGAAGTGCCTTTTCTCTTCTCGATCAG 317
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 238 GCCGTAGGATTCATGGACGACCATTATCCCGTTCGAAGTGCCTTTTCTCTTCTCAATCAG 297
Query 318 -TAT 320
|||
Sbjct 298 GTAT 301
Score = 207 bits (112), Expect = 6e-53
Identities = 141/155 (91%), Gaps = 2/155 (1%)
Strand=Plus/Plus
Query 322 AAACTACTGATGATGTCCTAGGAAGAGGTGAAGAGCTGGACAGCTTAGTGGAGAGGAG-T 380
|||| | ||||| |||||||| |||||||| ||||||||||||||||||||| ||| |
Sbjct 467 AAACCATTGATGGTGTCCTAGCCCGAGGTGAAAAGCTGGACAGCTTAGTGGAGAAGAGCT 526
Query 381 ACAAAGTTAAGCCTGGCATCTAAGATGTTTTACAAGCAAGCGAAGAAAACAAACTCATGT 440
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 527 -CAGAGTTAAGCCTGGCATCGAAGATGTTTTACAAGCAAGCGAAGAAAACAAACTCATGT 585
Query 441 TGTACAATTCTCTAAGCTGTAATGCAATTCTTGAA 475
|||||| |||||||||||||||||||| |||||||
Sbjct 586 TGTACACTTCTCTAAGCTGTAATGCAACTCTTGAA 620
> AT5G58060.2 | Symbols: YKT61, ATYKT61, ATGP1 | SNARE-like superfamily
protein | chr5:23498139-23500384 FORWARD LENGTH=1060
Length=1060
Score = 113 bits (61), Expect = 1e-24
Identities = 98/115 (85%), Gaps = 6/115 (5%)
Strand=Plus/Plus
Query 348 GGTGAAG-AGCTGGACAGCTTAGTGGAGAGGAG-TACAAAGTTAAGCCTGGCATCTA-AG 404
|||| || ||||||||||| ||||||||| ||| | || | || ||| ||||||| | ||
Sbjct 697 GGTG-AGAAGCTGGACAGCCTAGTGGAGAAGAGCT-CAGATTTGAGCATGGCATC-ACAG 753
Query 405 ATGTTTTACAAGCAAGCGAAGAAAACAAACTCATGTTGTACAATTCTCTAAGCTG 459
||||||||||||||||||||||||||||| ||||| ||||| ||||| | |||||
Sbjct 754 ATGTTTTACAAGCAAGCGAAGAAAACAAATTCATGCTGTACTATTCTGTGAGCTG 808
> AT5G58070.1 | Symbols: ATTIL, TIL | temperature-induced lipocalin
| chr5:23500061-23501209 REVERSE LENGTH=1065
Length=1065
Score = 78.7 bits (42), Expect = 5e-14
Identities = 52/57 (91%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 403 AGATGTTTTACAAGCAAGCGAAGAAAACAAACTCATGTTGTACAATTCTCTAAGCTG 459
||||||||||||||||||||||||||||||| ||||| ||||| ||||| | |||||
Sbjct 1050 AGATGTTTTACAAGCAAGCGAAGAAAACAAATTCATGCTGTACTATTCTGTGAGCTG 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22605366150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5