BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950537
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58840.1 | Symbols: | Subtilase family protein | chr5:23759... 93.5 7e-19
AT5G59100.1 | Symbols: | Subtilisin-like serine endopeptidase ... 82.4 2e-15
> AT5G58840.1 | Symbols: | Subtilase family protein | chr5:23759003-23762059
FORWARD LENGTH=2294
Length=2294
Score = 93.5 bits (50), Expect = 7e-19
Identities = 62/68 (91%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 16 AACATCAATGGCTTGTCCACACGTTGCAGGCGTGGCTGCTTACCCCAAGACATTTCATCC 75
||| |||||| |||||||||||||||||||||||||||| ||| |||||| ||||||||
Sbjct 1531 AACTTCAATGTCTTGTCCACACGTTGCAGGCGTGGCTGCGTACATCAAGACGTTTCATCC 1590
Query 76 TGAATGGT 83
||||||||
Sbjct 1591 TGAATGGT 1598
> AT5G59100.1 | Symbols: | Subtilisin-like serine endopeptidase
family protein | chr5:23858894-23862129 REVERSE LENGTH=2325
Length=2325
Score = 82.4 bits (44), Expect = 2e-15
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 16 AACATCAATGGCTTGTCCACACGTTGCAGGCGTGGCTGCTTACCCCAAGACATTTCATCC 75
||| |||||||||||||||||||||||||||||||| || || |||||| ||||||||
Sbjct 1620 AACTTCAATGGCTTGTCCACACGTTGCAGGCGTGGCCGCCTATGTCAAGACTTTTCATCC 1679
Query 76 TGAATGGT 83
| ||||||
Sbjct 1680 TCAATGGT 1687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9953014302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5