BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950538
Length=1384
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58340.1 | Symbols: | myb-like HTH transcriptional regulato... 758 0.0
> AT5G58340.1 | Symbols: | myb-like HTH transcriptional regulator
family protein | chr5:23582495-23584412 FORWARD LENGTH=1626
Length=1626
Score = 758 bits (410), Expect = 0.0
Identities = 501/545 (92%), Gaps = 6/545 (1%)
Strand=Plus/Plus
Query 556 ACGAGTCGCGTGGTGAAAGGGAGGACGTTAATGGGATTGATAGAGAGAACGCTACTGATG 615
||||| ||||||||||||||||||||| |||||||||| |||||| ||||||| |||||
Sbjct 810 ACGAGGCGCGTGGTGAAAGGGAGGACGGGAATGGGATTGGTAGAGACAACGCTAATGATG 869
Query 616 GTGATGGAATGGAATGTCTGGAGAATGATGGGATTGATAATGTGAATGCAGCAGAGGAGG 675
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 870 GTGAAGGAATGGAATGTCTGGAGAATGATGGGATTGATAATGTGAATGCAGCAGACGAGG 929
Query 676 AGCACACAATGAGTGCACAAGAACAGGAACATGAGCAAAGTCTTGATAAGGGAGACAAAA 735
|||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| |||
Sbjct 930 AGCACACAGTGAGTGCACAAGATCAGGAACATGAGCCAAGTCTTGATAAGGGAGACGAAA 989
Query 736 TGGTTGCTCGAGAGCTGGAGGATTATTT-GTTAGAGATTCAAAGACACATCGACCCTTCC 794
||| ||||||||||||| |||| ||||| || |||||||||| |||||||||||||||||
Sbjct 990 TGGCTGCTCGAGAGCTGAAGGAATATTTAGT-AGAGATTCAAGGACACATCGACCCTTCC 1048
Query 795 ATTAGGCGAGGGGAAGAACCTAACACTGCAATTAATCACTCAGTAGATGTCACTCCTCAG 854
| ||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |
Sbjct 1049 ACTAGGCAAGGGGAAGAACCTAACAGTGCAATTGATCACTCAGTAGATGTCACTCCTCCG 1108
Query 855 CCTACTCGGGTGAATAGGACTGGAACACGCGGTCAAGACCATAATGAAGCAACAGATAAT 914
||||||||||||||||||||||||||| || ||||||||||||| |||||| | ||||||
Sbjct 1109 CCTACTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCGGATAAT 1168
Query 915 GTAAATGAGAAAGGTTCTGATAGTCAGAGAA-CGTGGTCTGGCAGAGTTCGGCCTCGTCT 973
||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||||
Sbjct 1169 GTAAATGAGAAAGGTTCGGATAGTCAG-GAAACATGGTCTAGCAGAGTTCGGCCTCGTCG 1227
Query 974 ACCAACCCCTGTAACTCTGAATGTATCTCCATTGAAGAA-GGACGGATTGGCAAAACCCC 1032
|||||||||||||||||||| |||||||||||| ||||| || ||||||||| ||||| |
Sbjct 1228 ACCAACCCCTGTAACTCTGAGTGTATCTCCATTAAAGAAAGG-CGGATTGGCGAAACCAC 1286
Query 1033 ATGTCAGAAGGCCAAAGAAATTCTGGACGCCTGAAGAAGTGGAAGCTCTGAGGGAAGGAG 1092
||||||| || |||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1287 ATGTCAGGAGACCAAAGAAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAG 1346
Query 1093 TAAAA 1097
|||||
Sbjct 1347 TAAAA 1351
Score = 263 bits (142), Expect = 4e-69
Identities = 169/182 (93%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 356 TGACTTGTTGAAGTGGGAGACTGATTTTAAGAAGGCTC-TCGAGGAACCTGAGCTCTATC 414
|||||||||||| ||||||| |||||| |||||||| | | || || |||||||||||||
Sbjct 520 TGACTTGTTGAAATGGGAGAGTGATTTGAAGAAGGCCCTTGGA-GATCCTGAGCTCTATC 578
Query 415 AGCGAATTCGTGAGACTAATATCAGGTACACTGCCATTTCCTTTCTCACTCAGCTTCTCA 474
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 579 AGCGAATTCGTGAGACTAACATCAGGTACACTGCCATTTCCTTTCTCACTCAGCTTCTCA 638
Query 475 AAGAGCAGTGGGCATTACTTGGGAGTTTCTCTCTTGAATCAGTTTCTCAAAGAAGGTTTC 534
|||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 639 AAGAACAGTGGGCATTACTTGGGAGTTCCTCTCTTGAATCAGTAGCTCAAAGAAGGTTTC 698
Query 535 TT 536
||
Sbjct 699 TT 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68172340110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5