BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950547
Length=469
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58390.1 | Symbols: | Peroxidase superfamily protein | chr5... 403 7e-112
AT5G58400.1 | Symbols: | Peroxidase superfamily protein | chr5... 195 4e-49
> AT5G58390.1 | Symbols: | Peroxidase superfamily protein | chr5:23599567-23601325
REVERSE LENGTH=1220
Length=1220
Score = 403 bits (218), Expect = 7e-112
Identities = 321/371 (87%), Gaps = 6/371 (2%)
Strand=Plus/Plus
Query 20 CATGGTCGCCCTCTCTGGTGCTCACACCTTTGGACGAGCCAAATGTGTTACATTTAGAAA 79
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||
Sbjct 624 CATGGTCGCCCTCTCTGGTGCTCACACCATTGGACGAGCCCAATGTGTTACATTCAGAAA 683
Query 80 CCGTATCTACAACGAAAGTAACATCGACACCTCTTTCGCTATCTC-AAGACGGAAGAGTT 138
||| |||||||||| ||| || ||||||||||||||||| ||||| || ||||| || |
Sbjct 684 CCGAATCTACAACGCAAGCAATATCGACACCTCTTTCGCCATCTCTAA-ACGGAGGAACT 742
Query 139 GTCCAGCCGCCAATGGCTCCGGAGACAACAAGGAAGCCAATCTTGACGTCCGCACTCCTG 198
|||| ||| ||| ||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct 743 GTCCTGCCACCAGTGGCTCCGGAGACAACAAGAAAGCCAATCTTGACGTCCGCTCTCCCG 802
Query 199 ATAGGTTCGACCACAACTACTATAAGCAACTTCTCAGCAATAAGGGTTTGCTTACGCCAG 258
|||||||||||||| || ||| ||||||||||| ||||| || |||||||||||| |||
Sbjct 803 ATAGGTTCGACCACGGCTTCTACAAGCAACTTCTGAGCAAAAAAGGTTTGCTTACGTCAG 862
Query 259 ACCAAGTCCTCTTTAATAACGGTCCCACCGACTCGATCGTCGTATCCTACAGCCGGAGTG 318
||||||||||||||||||| ||||| ||||||||| ||||| || | ||||||| | |
Sbjct 863 ACCAAGTCCTCTTTAATAATGGTCCTACCGACTCGCTCGTCATAGCTTACAGCCACAATC 922
Query 319 TCCGTTCCTTCTACCGCGA-TTTCGTAACGGCGATGATAAAAATGGGCA-ACATCAGCCC 376
|| | ||||||||||||| ||| | || ||| ||||| || ||||| | ||||||||||
Sbjct 923 TCAATGCCTTCTACCGCGACTTT-GCAAGGGCAATGATTAAGATGGG-AGACATCAGCCC 980
Query 377 ACTCACCGGAT 387
||||||||||
Sbjct 981 CCTCACCGGAT 991
> AT5G58400.1 | Symbols: | Peroxidase superfamily protein | chr5:23605202-23607028
REVERSE LENGTH=1194
Length=1194
Score = 195 bits (105), Expect = 4e-49
Identities = 288/375 (77%), Gaps = 18/375 (5%)
Strand=Plus/Plus
Query 20 CATGGTCGCCCTCTCTGGTGCTCACACCTTTGGACGAGCCAAATGTGTTACATTTAGAAA 79
|||||| || ||||| || ||||||||| |||| | ||||| || || || || || |
Sbjct 631 CATGGTGGCGCTCTCCGGGGCTCACACCATTGGGCAAGCCAGGTGCGTCACCTTCAGGAG 690
Query 80 CCGTATCTACAACGAAAGTAACATCGACAC-CTC-TTTCG-C-TATCTCAAGACGGAAGA 135
||| || || ||| || ||||||||| | || ||| | | |||| | ||||||| ||
Sbjct 691 CCGGATATATAACTCAACAAACATCGAC-CTTTCATTT-GCCTTATC-C-AGACGGAGGA 746
Query 136 GTTGTCCAGCCGCCAA-TGGCTCCGGAGACAACAAGGAAGCCAATCTTGA-CGTCCGCAC 193
| || || | || ||| ||||||||| || ||||| | |||| ||| || | |||||||
Sbjct 747 GCTGCCCTG-CGGCAACTGGCTCCGGCGATAACAACGCCGCCATTCTCGATC-TCCGCAC 804
Query 194 TCCTGATAGGTTCGACCACAACTACTAT-AAGCAACTTCTCAGCAATAAGGG-TTTGCTT 251
||||| | ||||||| || ||||| | | ||| ||| ||| | | | ||| || ||
Sbjct 805 ACCTGAAAAGTTCGACGGCAGCTACT-TCATGCAGCTTGTCAACCACAGGGGACTT-CTC 862
Query 252 ACGCCAGACCAAGTCCTCTTTAA-TAACGGTCCCACCGACTCGATCGTCGTATCCTACAG 310
|| |||| || ||| | || || | ||| ||||||||||||||||||||||||||||
Sbjct 863 ACATCAGATCAGGTCTTGTTCAACGGA-GGTTCCACCGACTCGATCGTCGTATCCTACAG 921
Query 311 CCGGAGTGTCCGTTCCTTCTACCGCGATTTCGTAACGGCGATGATAAAAATGGGCAACAT 370
||||||||||| | |||||| | ||||| ||| |||||||||||||||||||| ||||
Sbjct 922 CCGGAGTGTCCAAGCATTCTACAGAGATTTTGTAGCGGCGATGATAAAAATGGGCGACAT 981
Query 371 CAGCCCACTCACCGG 385
|||||||||||||||
Sbjct 982 CAGCCCACTCACCGG 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22303961268
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5