BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950552
Length=1916
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58430.1 | Symbols: ATEXO70B1, EXO70B1 | exocyst subunit exo... 3014 0.0
> AT5G58430.1 | Symbols: ATEXO70B1, EXO70B1 | exocyst subunit exo70
family protein B1 | chr5:23621183-23623444 REVERSE LENGTH=2262
Length=2262
Score = 3014 bits (1632), Expect = 0.0
Identities = 1815/1904 (95%), Gaps = 9/1904 (0%)
Strand=Plus/Plus
Query 4 TTCCAC--CTGTGTTCAATCATGGCGGAGAATGGTGAAGAGAAATTACTTGCTGTTGCGC 61
|||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 92 TTCCACATCTGT-TTCAATCATGGCGGAGAATGGTGAAGAGAAGTTACTTGCTGTTGCGC 150
Query 62 GTCACATAGCCAAAACACTTGGCCATAACGAATCCATGGCCGATGATATCTTACAGATCT 121
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 151 GTCACATAGCCAAAACACTTGGCCACAATGAATCCATGGCCGATGATATCTTACAGATCT 210
Query 122 TCTCCAACTTCGACGGCAGATTTTCTCGCGAAAAGCTCGCTGAAGGTCAAGCTGGAGAAG 181
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 211 TCTCCAACTTCGACGGCAGATTTTCTCGCGAGAAGCTCGCCGAAGGTCAAGCTGGAGAAG 270
Query 182 ATGGATCCGGAGTCGCCACACTCGAGCGAGCTCTAAATTCAATAGACGGTCAGATCTCTC 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 ATGGATCCGGAGTCGCCACACTCGAGCGAGCTCTAAATTCAATAGACGGTCAGATCTCTC 330
Query 242 GCTTTGTTGCCGCGGATCAACCTATTTGGGCTGATCCTGCTGATTCAGCTGCTTTCCTCG 301
|||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 331 GCTTTGTTGCTGCGGACCAACCAATTTGGGCTGATCCTGCAGATTCAGCTGCTTTCCTCG 390
Query 302 ACACAATCGATGAGCTCGTTGCTATCATCAGAGAGTGGAGTCCCATGGCTTCAGAGACAC 361
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||
Sbjct 391 ACACAATCGATGAGCTCGTTGCAATCATTAGAGAGTGGAGTCCCATGGCTTCAGAGAAAC 450
Query 362 CTATCGGCGTCTGTCTAGCACGCGCCGACGATATGATGCAGCAAGCTATGTTCCGCATCG 421
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 CTATCGGCATCTGTCTAACACGCGCCGACGATATGATGCAGCAAGCTATGTTCCGCATCG 510
Query 422 AAGAAGAGTTCAGGTCGCTTATGGAGCGTGGAGCTGAGTCGTTT-GG-CTTAAATCCTCA 479
|||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||
Sbjct 511 AAGAAGAGTTCAGGTCGCTTATGGAGCGTGGAGCTGAGTC-TTTCGGACTTAA-TCCTCA 568
Query 480 GGGAGACGCTGATGCGATGAATCATCGTTTCGACTCTGAGGAAGAAGATGATGATGACAG 539
||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 569 GGGAGACGCTGGTGCGATGAATCATCGTTTCGATTCTGAGGAAGAAGAAGATGATGACAG 628
Query 540 AGATTTCAACAACGGTGATGATATTCAGATCCCAGTGGCACAGCCACTCACTGACTACGA 599
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 AGACTTCAACAACGGTGATGATATTCAGATCCCAGTGGCACAGCCACTCACTGACTACGA 688
Query 600 TCTTATCATCGATGCCCTCCCGTCGGCGACAATTAACGATCTACATGAGATGGCTAAGCG 659
||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 689 TCTTATCATTGATGCTCTCCCTTCGGCGACAATTAACGATCTACACGAGATGGCTAAGCG 748
Query 660 AATGCTTGGCGCTGGATTTGGTAAGGCGTGTTCTCATGTTTATAGTTCTTGTAGGAGAGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 AATGCTTGGCGCTGGATTTGGTAAGGCGTGTTCTCATGTTTATAGTTCTTGTAGGAGAGA 808
Query 720 GTTTTTGGAAGAAAGCATGTCGAGGTTAGGGTTACAGAAGCTGAGTATTGAAGAAGTTCA 779
|||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 809 GTTTCTGGAAGAAAGTATGTCAAGGTTAGGGTTACAGAAGCTGAGTATTGAAGAAGTTCA 868
Query 780 TAAGATGCCGTGGCAGGAGCTAGAGGATGAGATAGATAGGTGGATTAAAGCTGCTAACGT 839
||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct 869 TAAGATGCCGTGGCAGGAGTTAGAAGATGAGATAGATAGGTGGATCAAAGCTGCTAACGT 928
Query 840 CGCTCTAAGAATCCTCTTTCCGAGCGAACGTAGACTCTGTGACCGCGTTTTCTTCGGTTT 899
|||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 929 TGCTCTAAGAATCCTGTTTCCTAGCGAACGTAGACTCTGTGACCGTGTCTTCTTCGGTTT 988
Query 900 CTCCTCTGCTGCTGATCTCTCATTCATGGAGGTATGTCGTGGCTCTACCATTCAGCTTCT 959
|||||||||||||||||| || || |||||||| ||||||||||||||||||||||||||
Sbjct 989 CTCCTCTGCTGCTGATCTTTCGTTTATGGAGGTTTGTCGTGGCTCTACCATTCAGCTTCT 1048
Query 960 GAATTTCGCAGACGCGATTGCTATTGGAAGCCGGTCGCCTGAGAGATTGTTTAAAGTGCT 1019
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1049 GAATTTCGCAGACGCGATTGCTATTGGAAGCAGATCGCCTGAGAGATTGTTTAAAGTGCT 1108
Query 1020 TGATGTATTCGAGACAATGAGGGATTTGATGCCTGAGTTCGAGTCTGTGTTCTCGGATCA 1079
|||||| || |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1109 TGATGTGTTTGAGACAATGAGGGATTTGATGCCTGAATTTGAGTCTGTGTTCTCGGATCA 1168
Query 1080 GTTTTGCTCAGTTCTTAGAAATGAAGCAGTTACCATTTGGAAACGATTGGGAGAGGCGAT 1139
|||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 1169 GTTTTGCTCAGTTCTTAGAAATGAAGCAGTAACTATTTGGAAACGGTTGGGAGAGGCGAT 1228
Query 1140 AAGAGGTATATTTATGGAGCTTGAGAATTTGATCCGGCGAGACCCGGCCAAAGCTGCGGT 1199
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1229 AAGAGGTATATTTATGGAGCTTGAGAATTTGATCCGGCGAGACCCGGCTAAAGCTGCGGT 1288
Query 1200 TCCAGGTGGTGGTCTCCACCCGATCACTCGTTATGTGATGAATTACCTCCGTGCGGCGTG 1259
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1289 TCCGGGCGGTGGTCTCCACCCGATCACTCGTTATGTGATGAATTACCTCCGTGCGGCTTG 1348
Query 1260 CAGATCCCGACAAACCTTAGAGCAAGTGTTTGAGGAAAGCAATGGCGTCCCTTCTAAAGA 1319
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1349 TAGATCCCGGCAAACCTTAGAGCAAGTGTTTGAGGAAAGCAATGGTGTCCCTTCTAAAGA 1408
Query 1320 TTCAACTCTGTTGACTGTACAGATGTCTTGGATCATGGAGCTTCTAGAGAGTAACTTGGA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 TTCAACTCTGTTGACTGTACAGATGTCTTGGATCATGGAGCTTCTAGAGAGTAACTTGGA 1468
Query 1380 AGTAAAATCCAAAGTGTACAAAGATCCAGCCTTGTGCTATGTGTTTCTGATGAACAACGG 1439
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 1469 AGTAAAATCTAAAGTGTACAAAGATCCAGCTTTGTGCTATGTGTTTCTGATGAATAATGG 1528
Query 1440 GAGATACATTGTTCAGAAGGTGAAGGATGGAGACCTAGGATTGCTCTTAGGAGATGATTG 1499
|||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct 1529 GAGATACATTGTTCAGAAAGTCAAAGATGGAGACCTAGGATTGCTGTTAGGAGATGATTG 1588
Query 1500 GATTCGGAAACACAATGTCAAAGTGAGACAATACCATATGAATTATCAGAGAAGCTCATG 1559
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1589 GATTCGGAAACACAATGTCAAAGTGAAACAATACCATATGAATTATCAGAGAAGCTCATG 1648
Query 1560 GAATAAGATGCTGGGGTTACTGAAGGTGGACAATACAGCGGAAGGCATGAGCGGTTTGGG 1619
|||||||||||||||||| ||||||||||| ||||| || | |||||||| |||||||||
Sbjct 1649 GAATAAGATGCTGGGGTTGCTGAAGGTGGATAATACTGCAGCAGGCATGAACGGTTTGGG 1708
Query 1620 GAAAACCATGAAGGAGAAGCTGAAGCAGTTCAATATCCAGTTTGATGAGATATGTAAAGT 1679
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1709 GAAGACCATGAAGGAGAAGCTGAAGCAGTTCAATATTCAGTTTGATGAGATATGTAAAGT 1768
Query 1680 GCATTCGACGTGGGTAGTGTTTGACGAGCAGCTGAGAGAGGAGCTGAAA-ATCTCACTGG 1738
||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||
Sbjct 1769 GCATTCGACGTGGGTAGTGTTTGACGAGCAGCTGAAAGAAGAGCT-AAAGATCTCACTGG 1827
Query 1739 CCAGGCTTTTGGTACCGGCATACGGGAGCTTCATCGGAAGGTTCCAAAACCTTGGAGACA 1798
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1828 CCAGGCTTTTGGTACCGGCATACGGGAGCTTCATCGGCAGGTTCCAAAACCTTGGAGACA 1887
Query 1799 TAGGGAAAAACGCGGACAGGTACATCAAGTATGGAGTTGAGGACATAGAGGCGCGAATCA 1858
||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |
Sbjct 1888 TAGGGAAAAACGCAGACAAGTACATCAAGTATGGAGTTGAGGACATAGAGGCGCGTATTA 1947
Query 1859 ACGAGCTTTTCAAAGGGACAACCACAGGAAGAAAATGAAGGTAA 1902
||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 1948 ACGAGCTGTTCAAAGGGACTACCACGGGAAGAAAATGAAGGTAA 1991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94879030050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5