BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950559
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58480.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2207 0.0
> AT5G58480.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr5:23641142-23642853 REVERSE LENGTH=1543
Length=1543
Score = 2207 bits (1195), Expect = 0.0
Identities = 1390/1484 (94%), Gaps = 14/1484 (1%)
Strand=Plus/Plus
Query 5 AGATTCACTGGATTTGATGGCTCGTCGGCTGTTTCTCCTCCTCCTCGCCGTGACGG-TGG 63
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 12 AGATTCACTGGATTTGATGGCTCGTCGGCTGTTTCTCCTCCTCCTCGCCGTCACGGCAGG 71
Query 64 AGTTGAGCTTGACGGGAACAATCGTC-GTAGCA-TTCGGCGTAAACTGGGGGACGGAAGC 121
|||||||||||||||||||| |||| | |||| || ||| |||| |||||||| |||||
Sbjct 72 -GTTGAGCTTGACGGGAACAACCGTCAG-AGCAGTT-GGCATAAATTGGGGGACAGAAGC 128
Query 122 GTCGCACCCTCTTCCGCCTTCAAAGGTTGTAGAGCTTCTGAAATCAAACGGCATTGCCAA 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 129 GTCGCACCCTCTTCCGCCTTCAAAGGTTGTAGAGCTTCTGAAATCAAACGGCATTGTCAA 188
Query 182 AGTGAAGCTCTTCGATGCCGACCCAAAAGTTCTCCGAGCTCTCTCTGGCTCTAATATCGG 241
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 189 AGTGAAGCTCTTCGATGCCGACCCAAAAGTTCTCCGAGCTCTCTCTGGTTCTAATATTGG 248
Query 242 GGTCACTGTCGGAATCAAAAATTCGATGCTCAAGAGCTTGAATGCATCCGTAAAGGTAGC 301
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 TGTCACTATCGGAATCCAAAATTCGATGCTCAAGAGCTTGAATGCATCCGTAAAGGTAGC 308
Query 302 AGAGAGCTGGGTCCATGACAATGTCACTCGTTACTTCAACGGCGGAAACAGAGTTCGAAT 361
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 309 AGAGAGCTGGGTACATGACAATGTCACTCGTTACTTCAACGGTGGAAACAGAGTTCGAAT 368
Query 362 CGAGTACGTAGCAGTTGGAGATGAGCCATTTCTCCAGAGCTATGGCAATCAGTATAGGCC 421
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 369 CGAGTATGTAGCAGTTGGAGAAGAGCCATTTCTCCAGAGCTATGGCAATCAGTATAAGCC 428
Query 422 TTTTGTCATTGGAGCAGCTATGAACATCCAAAATGCTTTAGCAAAGGCGAGCTTGGCAAA 481
|||||| ||||| ||||||||||| |||||||||||||||| ||||||| |||||||||
Sbjct 429 TTTTGTGATTGGGGCAGCTATGAATATCCAAAATGCTTTAGTTAAGGCGAACTTGGCAAA 488
Query 482 TGACGTCAAGGTTGTAGTCCCCTCAAGCTTTGACTCCTTTCTTTCTGAATCCGGTCGACC 541
||| || |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 489 TGAAGTGAAGGTTGTAGTCCCCTCAAGCTTTGATTCCTTTCTTTCTGAATCTGGTCGACC 548
Query 542 TTCTTCAGGACACTTTAGGGCTGACCTCAACAAGACGATGATCGAACTCCTCTCCTTTCT 601
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 549 TTCTTCAGGACACTTTAGGGCTGACCTCAACAAGACGATGATTGAACTCCTCTCCTTTCT 608
Query 602 CACAAAGCATCACTCTCCtttttttGTCACAATATCTCCTTTCCTAAGCTTTCACCAGAA 661
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 609 CACAAAGCACCACTCTCCTTTTTTTGTGACAATCTCTCCTTTCCTAAGCTTTCACCAGAA 668
Query 662 CAAGAACATCTCTCTCGACTTTAGCCTCTTCAAACAAACAGCACAGGCTCACAAAGATGG 721
|||||||||||| || |||||||||||||| ||| |||||||| ||||||||||||| ||
Sbjct 669 CAAGAACATCTCCCTTGACTTTAGCCTCTTTAAAGAAACAGCAAAGGCTCACAAAGACGG 728
Query 722 GCGTAAAACCTACAGAAACAGCTTTGATCTGAGCTACGACATACTTGTCTCTGCATTGTC 781
||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct 729 ACGTAAAACCTACAGAAACAGCTTTGATCTAAGCTATGACACACTTGTCTCTGCATTGTT 788
Query 782 CACAATTGGGTTCTCAGAGGTGGATATCGTCGTGTCAAAGATCGGTTGGCCTACAGATGG 841
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 789 CACAATTGGGTTTTCGGAGGTGGATATCGTTGTGTCAAAGATCGGTTGGCCTACAGATGG 848
Query 842 AGCAGCAAATGCCACATCACCGACTGCTGAGGCGTTCTTCAAAGGACTGATGGGTCACTT 901
||||| |||||| ||||||| |||||||||||||||||| ||||||||||| | ||||||
Sbjct 849 AGCAGAAAATGCAACATCACTGACTGCTGAGGCGTTCTTTAAAGGACTGATAGTTCACTT 908
Query 902 GGAGAAAAAGACGGGTTCTCTCCCGCGCCCTCCCGTTGAAACCTACATTGAAAGCCTGTT 961
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||| || ||
Sbjct 909 GGAGAAAAAGACGGCCTCTCTCCCGCGTCCTCCTGTTGAAACCTACATTGAAAGTCTCTT 968
Query 962 GGACGAAGATCAGAGAAACTTATCTTCTGGGAACTTTGAGAGGCACTGGGGAGTGTTCAC 1021
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 969 GGACGAAGATCAGAGAAACTTATCTGCTGGGAACTTTGAGAGGCACTGGGGAGTGTTCAC 1028
Query 1022 ATTCGATGGTCAAGCCAAATACAGTTTCAATTTCAGCCATAACCCGAAGAAAGTGGGAAA 1081
||||| |||||||||||||||| ||||| ||||| |||||| ||| | || |||
Sbjct 1029 TTTCGACGGTCAAGCCAAATACAATTTCAGTTTCAACCATAA---GAA-TCA--GGTAAA 1082
Query 1082 CGCGCAGAATGTTCAGTACCTTCCTCCTAAGTGGTGTGTGGTGAACAATAACAAGGACTT 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 CGCGCAGAATGTTCAGTACCTTCCTCCTAAGTGGTGTGTGGTGAACAATAACAAGGACTT 1142
Query 1142 GTCAAACGCGTCAGCAAGAGCATTAGAAGCTTGTGCTGTCGCGGACTGCACATCGATACT 1201
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 1143 GTCAAACGCGTCAGCAAGAGCATTAGAAGCGTGTGCTGTTGCGGACTGTACATCGATACT 1202
Query 1202 TCCTGGCGGGTCGTGTTCCGGCATCAGATGGCCAGGCAACGTGTCATACGCGTTCAATAG 1261
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1203 TCCTGGCGGGTCGTGTTCAGGCATCAGATGGCCAGGCAACGTTTCATACGCGTTCAATAG 1262
Query 1262 CTTGTATCAGCAAAATGATCACAGTGCAGAAAGCTGCAACTTTGGTGGACTTGGTTTGAT 1321
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 CTTGTACCAGCAAAATGATCACAGTGCAGAAAGCTGCAACTTTGGTGGACTTGGTTTGAT 1322
Query 1322 CACTACCGTTGATCCTTCTGAGGATAATTGCAGGTTCTCGATTCAACTTGACACTTCTCA 1381
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1323 CACTACTGTTGATCCTTCTGAGGATAATTGCCGGTTCTCGATTCAACTTGACACTTCTCA 1382
Query 1382 TTCAGCTTCGCAAATTCCTAGTTTCTGTCAGAGCTGGCCTCTCCTC--ATTGTTCCTACT 1439
|||| ||||||||| ||| | ||||| ||||||||||||||||||| ||||||||||||
Sbjct 1383 TTCATCTTCGCAAACTCCAAATTTCTTTCAGAGCTGGCCTCTCCTCTTATTGTTCCTACT 1442
Query 1440 GTCTGGACTCTTTTAAAGTTGTAGTTATAGCAAAATTTTGGTGG 1483
||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 GTCCGGACTCTTTTAAAGTTGTAGTTATAGCAAAATTTTGGTGG 1486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73142194065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5