BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950561

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G58500.1 | Symbols: LSH5 | Protein of unknown function (DUF6...   865    0.0  


> AT5G58500.1 | Symbols: LSH5 | Protein of unknown function (DUF640) 
| chr5:23645535-23646083 REVERSE LENGTH=549
Length=549

 Score =  865 bits (468),  Expect = 0.0
 Identities = 522/548 (95%), Gaps = 3/548 (1%)
 Strand=Plus/Plus

Query  21   ATGGAGGGAGAAACCGCAGCCAAAGCAGCGGCTAGTTCCTCCTCATCCCCAAGCCGGTAC  80
            |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  1    ATGGAGGGAGAAACCGCAGCCAAAGCAGCGGCAAGTTCCTCCTCATCCCCGAGCCGGTAC  60

Query  81   GAGTCACAAAAGAGGCGAGACTGGAACACTTTCCTTCAGTATCTAAGGAACCACAAGCCA  140
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GAGTCTCAAAAGAGGCGAGACTGGAACACTTTCCTTCAGTATCTAAGGAACCACAAGCCA  120

Query  141  CCTCTGAATCTGTCTCGTTGTAGTGGCGCACACGTCCTTGAGTTCCTTAAGTACCTCGAC  200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCTCTGAATCTGTCTCGTTGTAGTGGCGCACACGTCCTTGAGTTCCTTAAGTACCTCGAC  180

Query  201  CAGTTTGGTAAAACCAAAGTCCATGCCACGGCTTGTCCCTTCTTCGGACAACCTAACCCA  260
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CAGTTTGGTAAGACCAAAGTCCATGCCACGGCTTGTCCCTTCTTCGGACAACCTAACCCA  240

Query  261  CCGTCTCAGTGCACTTGCCCTCTCAAGCAAGCTTGGGGAAGCCTCGACGCTCTCATTGGC  320
            ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct  241  CCGTCTCAGTGCACTTGCCCTCTCAAGCAAGCTTGGGGAAGTCTCGATGCTCTCATCGGC  300

Query  321  CGTCTAAGGGCTGCTTTCGAGGAAATCGGCGGTGGTCTTCCTGAGTCAAACCCTTTCGCT  380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CGTCTAAGGGCTGCTTTCGAGGAAATCGGCGGTGGTCTTCCTGAGTCAAACCCTTTCGCT  360

Query  381  GCCAAAGCTGTTAGTATCTATCTTAAGGAAGTCCGTCAAACTCAGGCTAAGGCTCGAGGG  440
            ||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct  361  GCCAAGGCTGTTAGGATCTATCTTAAAGAAGTCCGTCAAACACAGGCTAAGGCTCGAGGG  420

Query  441  ATTCCTTACGACAAGAAGAAACGGAAACGACCTCATACAGCCACAGCAACTCCAATCGCC  500
            ||||||||||||||||||||| | ||||| || ||||||| ||| |||||||||||||||
Sbjct  421  ATTCCTTACGACAAGAAGAAAAGAAAACGTCCGCATACAGACACGGCAACTCCAATCGCC  480

Query  501  GGTGATGGAGACGACGCCGGAGGAAGTGGTG---CTGCTTTGGTCGTAACCACTGCAACT  557
            ||||| |||||||| |||| |||||||||||   ||||||||||||| ||  ||||||||
Sbjct  481  GGTGACGGAGACGATGCCGAAGGAAGTGGTGGTGCTGCTTTGGTCGTTACGGCTGCAACT  540

Query  558  ACGGTATA  565
            ||||||||
Sbjct  541  ACGGTATA  548



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28181356467


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5