BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950583
Length=268
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58650.1 | Symbols: PSY1 | plant peptide containing sulfated... 342 8e-94
> AT5G58650.1 | Symbols: PSY1 | plant peptide containing sulfated
tyrosine 1 | chr5:23699708-23700226 REVERSE LENGTH=439
Length=439
Score = 342 bits (185), Expect = 8e-94
Identities = 243/270 (90%), Gaps = 8/270 (3%)
Strand=Plus/Plus
Query 1 ATTACATCAGACAGATAGATATGAGTTTTGTAGTTCGTCTTCTTGTGTGTCTCTTATTGA 60
|||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 21 ATTATATCAGACAGAGAGATATGACTTTTGTAGTTCGTCTTCTTGTGTGTCTCTTATTGA 80
Query 61 CGCTTACAATTACATC-T-T-TAGCCCGCAACCCTGTTTCCGTTTCAGGTGGGTTTGAGA 117
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 81 CGCTTACAATTACATCTTCTCTAGCCCGCAACCCTGTTTCCGTTTCAGGTGGGTTTGAGA 140
Query 118 ATTCCGGATTCGAAAGAAGGAGGTTGTTGATGGTGAACGTTGAGGATTACGGTGACCCGT 177
|||| |||||| |||| | || ||||||||||||||||||||||| ||||||||||| |
Sbjct 141 ATTCTGGATTCCAAAG--G-AGTTTGTTGATGGTGAACGTTGAGGACTACGGTGACCCAT 197
Query 178 CTGCAAATCCAAAACACAATCCCGGTGTACCTCCGTCAACTACCGGCCAACGTGTCG-CT 236
|||||||||| || ||| | ||||| || ||||||||| | |||||||||||||||| |
Sbjct 198 CTGCAAATCCTAAGCACGACCCCGGCGTTCCTCCGTCAGCAACCGGCCAACGTGTCGTC- 256
Query 237 GGAAGAGGCTGACCTAGTGTTTTAGTTAAC 266
|| |||||||||| || |||||||||||||
Sbjct 257 GGCAGAGGCTGACGTAATGTTTTAGTTAAC 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12265330756
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5