BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950586
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58680.1 | Symbols: | ARM repeat superfamily protein | chr5... 1568 0.0
AT3G01400.1 | Symbols: | ARM repeat superfamily protein | chr3... 955 0.0
> AT5G58680.1 | Symbols: | ARM repeat superfamily protein | chr5:23708112-23709351
REVERSE LENGTH=1240
Length=1240
Score = 1568 bits (849), Expect = 0.0
Identities = 1040/1128 (92%), Gaps = 29/1128 (3%)
Strand=Plus/Plus
Query 1 ATCTCATCATAGTCATAGCAATGGAGAATCACAAGAGTTTCTTCACTTACATGGACCATA 60
||||||| | | |||||||||||| ||||||||| || | |||||||||||||||||||
Sbjct 13 ATCTCAT-AGACTCATAGCAATGGCGAATCACAACAG--T-TTCACTTACATGGACCATA 68
Query 61 AATTCAGCGAT-TCAAGTCTCAACTTTGATTCCTCTGCTTTCAGCGATTGTAACAGCGAC 119
||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 69 GCTTCAGCGATAT-AAGTCTCAACTTTGATTCCTCTGCTTTCAGCGATTGTAACAGTGAC 127
Query 120 AGATCCGGCGAATTTCCAACAACTTCCTCCGAGAGCCGTCAACGAAAACTCTTCCTCTCT 179
| |||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 128 ATATCCTGCGAGTTTCCAACAACTACCTCCGAGAGCCGTCAACGAAAACTCTTCCTCTCT 187
Query 180 TGCGCCGTTGATAATTCCGACGATTTGATTC-GATGTCTCATAACACATCTTGAGTCATC 238
|||||||||||||||||||| || ||| || || ||||||||| ||||||||||||
Sbjct 188 TGCGCCGTTGATAATTCCGATGACGTGA-TCAGAAATCTCATAACGCATCTTGAGTCA-- 244
Query 239 TTCTTCTTCGATCGAGGAACAGAAGCAAGCTGCTATGGAGATTAGACTCTTATCAAAGAA 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 -TCTTCTTCGATCGAGGAACAGAAGCAAGCTGCTATGGAGATTAGACTCTTATCAAAGAA 303
Query 299 CAAACCAGAGGAA-CGTAACAAAATCGCTAAAGCCGGTGCGATTAAACCGTTGGTTTCTT 357
|||||||||| || |||| |||| |||||||||||||||| |||||||||||||||||||
Sbjct 304 CAAACCAGAG-AATCGTATCAAACTCGCTAAAGCCGGTGCTATTAAACCGTTGGTTTCTT 362
Query 358 TGATCTCGTCTTCCGATCTTCAGCTTCAGGAGTATGGAGTCACTGCGGTTTTGAATCTAT 417
| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 363 TAATCTCGTCTTCGGATCTTCAGCTTCAAGAGTATGGAGTCACTGCGGTGTTGAATCTAT 422
Query 418 CTATCTGCGATGAGAACAAAGAGATGATTATTTCTTCCGGTGCGATTAAACCGCTCGTTA 477
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 423 CTCTCTGCGATGAGAACAAAGAGATGATTGTTTCTTCCGGTGCGGTTAAACCGCTCGTTA 482
Query 478 ATGCGTTGCGGTTAGGAACACCGACGACGAAAGAGAACGCTGCTTGTGCTCTGCTTCGGT 537
|||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 483 ATGCGTTGAGATTAGGAACACCGACGACGAAAGAGAACGCTGCTTGTGCTCTGCTCCGGT 542
Query 538 TATCGCAATTGGAGGATAACAAAATCGCGATCGGAAGATCTGGAGCGATTCCTTTACTAG 597
|||| ||| ||||||| ||||||||| |||| || ||||| |||||||||||||||||||
Sbjct 543 TATCTCAAGTGGAGGAAAACAAAATCACGATTGGGAGATCAGGAGCGATTCCTTTACTAG 602
Query 598 TGAACCTTCTAGAAAATGGCGGATTCAGAGCAAAGAAAGACGCGTCGACGGCGTTGTACT 657
||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 603 TGAACCTTCTAGAAAATGGCGGATTCAGAGCGAAGAAAGACGCGTCGACGGCTTTATACT 662
Query 658 CGTTGTGTTCGACGAACGAGAACAAAATCAGAGCTGTGGAATCTGGGATTATGAAGCCGT 717
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 663 CGTTGTGTTCGACGAACGAGAACAAAACCAGAGCTGTTGAATCTGGGATTATGAAGCCGT 722
Query 718 TGGTGGAGTTGATGGCGGATTTTGAATCGGAGATGGTTGATAAATCGGCGTTTGTTATGA 777
| |||||||| ||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 723 TAGTGGAGTTAATGATTGATTTTGAATCGGATATGGTTGATAAATCAGCGTTTGTTATGA 782
Query 778 ATTTGTTAATGTCGGTGCCGGAATCGAAGCCGGCGGTTGTTGAGGAAGGAGGAGTTCCGG 837
|| |||||||||||| |||||||||||||||||||||||| || ||||||||||||||||
Sbjct 783 ATCTGTTAATGTCGGCGCCGGAATCGAAGCCGGCGGTTGTGGAAGAAGGAGGAGTTCCGG 842
Query 838 TGCTTG-TGGAGATTGTTGAAGCGGGAACACAGAGACAGAAGGAGATGAGTGTGTCGATA 896
|| ||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 843 TG-TTGGTTGAGATTGTTGAAGCGGGAACACAGAGACAGAAGGAGATAAGTGTGTCGATA 901
Query 897 TTGTTGCAGCTTTGTGAAGAGAGTGTTGTGTATCGAACCATGGTGGCTCGTGAAGGAGCG 956
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TTGTTGCAGCTTTGTGAGGAGAGTGTTGTGTATCGAACCATGGTGGCTCGTGAAGGAGCG 961
Query 957 GTTCCTCCGCTCGTGGCTTTATCGCAGAGTAGTAGTGCGAGTCGTGGTGCTAAGGTAAAG 1016
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 962 GTTCCTCCGCTCGTGGCTTTATCGCAG-G--GTAGTGCGAGTCGTGGTGCTAAGGTAAAG 1018
Query 1017 GCTGAGGCGTTGATAGAGCTTCTTAGGCAACCAAGACAACAACAACAACA-C-------- 1067
|||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1019 GCTGAGGCGTTGATAGAGCTTCTTAGGCAACCCAGACAACAACAACAACAACAACAACAC 1078
Query 1068 TTTGAATCCACCGACAACGAGAGATAACACTTT-GATTTGGGCTTTTT 1114
|||||||| | |||||||||||||||||||||| | ||||||||||||
Sbjct 1079 TTTGAATCTAACGACAACGAGAGATAACACTTTAG-TTTGGGCTTTTT 1125
> AT3G01400.1 | Symbols: | ARM repeat superfamily protein | chr3:151762-153217
FORWARD LENGTH=1456
Length=1456
Score = 955 bits (517), Expect = 0.0
Identities = 862/1024 (84%), Gaps = 41/1024 (4%)
Strand=Plus/Plus
Query 42 TTCACTTACATGGACCATAAATTCAGCGATTCAAGTCTCAACTTTGATTCCTCTGCTTTC 101
||||| ||||||| || ||||||||||||| |||||||||| ||| ||||||||||||
Sbjct 189 TTCACCTACATGGGCCGCAAATTCAGCGATTTAAGTCTCAACGATGACTCCTCTGCTTTC 248
Query 102 AGCGATTGTAACAGCGACAGATCCGGCGAATTTCCAACAACTTCCTCCGAGAGCCGTCAA 161
|||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 249 AGCGATTGTAACAGCGACAGATCCGGCGAATTCCCCACTGCTTCCTCCGAGAGCCGTC-- 306
Query 162 CGAAAACTCTTCCTCTCTTGCGCCGT-TGATAATTCCGACGATTTGATTCGATG-TCTCA 219
| ||| |||||||||||||| | ||| |||||||| ||| | || | || ||||
Sbjct 307 -GT---CTCCTCCTCTCTTGCGCC-TCTGAGAATTCCGATGATCTCAT-CAATCATCTCG 360
Query 220 TAACACATCTTGAGTCATCTTCTTCTTCGATCGAGGAACAGAAGCAAGCTGCTATGGAGA 279
| | |||||||| || || || ||||||||| || ||||||||||||||||||||||
Sbjct 361 TGTCGCATCTTGATTCCTC--CTA-TTCGATCGATGAGCAGAAGCAAGCTGCTATGGAGA 417
Query 280 TTAGACTCTTATCAAAGAACAAACCAGAGGAA-CGTAACAAAATCGCTAAAGCCGGTGCG 338
| || |||||||| ||||||||||| ||| || || | ||||||||| || |||||||||
Sbjct 418 TCAGGCTCTTATCCAAGAACAAACCTGAG-AATCGGATCAAAATCGCCAAGGCCGGTGCG 476
Query 339 ATTAAACCGTTGGTTTCTTTGATCTCGTCTTCCGATCTTCAGCTTCAGGAGTATGGAGTC 398
||||| |||||| ||||| ||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 477 ATTAAGCCGTTGATTTCTCTGATCTCTTCTTCGGATCTTCAGCTTCAGGAGTATGGTGTC 536
Query 399 ACTGCGGTTTTGAATCTATCTATCTGCGATGAGAACAAAGAGAT-GATTATTTCTTCCGG 457
||||| | |||||||||||| ||||||| |||||||||||| | |||| |||||||||
Sbjct 537 ACTGCAATCTTGAATCTATCTCTCTGCGACGAGAACAAAGAG-TCGATTGCTTCTTCCGG 595
Query 458 TGCGATTAAACCGCTCGTTAATGCGTTGCGGTTAGGAACACCGAC-GACGAAAGAGAACG 516
||||||||| ||||| || | || ||| | ||||||||||| | | ||||||||||
Sbjct 596 TGCGATTAAGCCGCTTGTCAGGGCTTTGAAAATGGGAACACCGACTG-CTAAAGAGAACG 654
Query 517 CTGCTTGTGCTCTGCTTCGGT-TATCGCA-ATTGGAGGATAACAAAATCGCGATCGGAAG 574
|||||||||||||||| || | ||||||| || | |||| |||||| |||| ||||| ||
Sbjct 655 CTGCTTGTGCTCTGCTCCG-TCTATCGCAGATCG-AGGAGAACAAAGTCGCCATCGGGAG 712
Query 575 ATCTGGAGCGATTCCTTTACTAGTGAACCTTCTAGAAA-ATGGCGGATTCAGAGCAAAGA 633
||| |||||||||||| | | |||||||||||||||| | |||||||||||||| ||||
Sbjct 713 ATCCGGAGCGATTCCTCTGTTGGTGAACCTTCTAGAAACA-GGCGGATTCAGAGCGAAGA 771
Query 634 AAGACGCGTCGACGGCGT-TGTACTCGTTGTGTTC-GACGAACGAGAACAAAATCAGAGC 691
| |||||||||||||| | ||||||||||||| || | | || |||||||||||||||||
Sbjct 772 AGGACGCGTCGACGGC-TCTGTACTCGTTGTGCTCAG-CTAAAGAGAACAAAATCAGAGC 829
Query 692 TGTGGAATCTGGGA-TTATGAAGCCG-TTGGTGGAGTTGATGGCGGATTTTGAATCGGAG 749
||| |||| |||| ||||||||||| ||| || | |||||||||||||| | ||| |
Sbjct 830 CGTGCAATC-GGGAATTATGAAGCCGCTTGTTGAA-TTGATGGCGGATTTCGGATCAAAC 887
Query 750 ATGGTTGATAAATCGGCGTTTGTTATGAATTTGTTAATGTCGGTGCCGGAATCGAAGCCG 809
||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||| |||
Sbjct 888 ATGGTGGATAAATCGGCGTTTGTGATGAGTCTGTTAATGTCGGTGCCGGAATCGAAACCG 947
Query 810 GCGGTTGTTGAGGAAGGAGGAGTTCCGGTGCTTGTGGAGATTGTTGAAGCGGGAACACAG 869
||| |||| ||||||||||||||||||||||| |||||||| || || | ||||||||||
Sbjct 948 GCGATTGTGGAGGAAGGAGGAGTTCCGGTGCTGGTGGAGATAGTAGAGGTGGGAACACAG 1007
Query 870 AGACAGAAGGAGATGAG-TGTGTCGATATTGTTGCAGCTTTGTGAAGAGAGTGTTGTGTA 928
|||||||| |||||| | ||||||||||||| | ||||||||||| ||||||||||||||
Sbjct 1008 AGACAGAAAGAGATG-GCTGTGTCGATATTGCTACAGCTTTGTGAGGAGAGTGTTGTGTA 1066
Query 929 TCGAACCATGGTGGCTCGTGAAGGAGCGGTTCCTCCGCTCGTGGCTTTATCGCAGAGTAG 988
| |||| ||||||||| | ||||||||| | |||||||| |||||| | |||||| | ||
Sbjct 1067 TAGAACAATGGTGGCTAGAGAAGGAGCGATACCTCCGCTAGTGGCTCTGTCGCAG-GCAG 1125
Query 989 TAGTGCGAGTCGTGGTGCTAAGGTAAAGGCTGAGGCGTTGATAGAGCTTCTTAGGCAACC 1048
| | ||||| | ||||| |||||||||||||||||| |||||||| ||||||||
Sbjct 1126 GAA--CAAGTCGAG---CTAAGCAAAAGGCTGAGGCGTTGATTGAGCTTCTAAGGCAACC 1180
Query 1049 AAGA 1052
||||
Sbjct 1181 AAGA 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54618192960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5