BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950590
Length=1570
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58720.1 | Symbols: | smr (Small MutS Related) domain-conta... 2348 0.0
> AT5G58720.1 | Symbols: | smr (Small MutS Related) domain-containing
protein | chr5:23719702-23723137 REVERSE LENGTH=1997
Length=1997
Score = 2348 bits (1271), Expect = 0.0
Identities = 1392/1451 (96%), Gaps = 5/1451 (0%)
Strand=Plus/Plus
Query 4 TCTATAATCGTGCGATAATGAAGCAGAAGGGCCAGCATAAGAAGAAGAAGAAGCGATCCT 63
|||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 147 TCTATAATTGTACGATAATGAAGCAGAAGAACCAGCATAAGAAGAAGAAGAAGCGATCCT 206
Query 64 GCGCCGCGAAATCTTCCGGTGATGGAACGGCGTCGGACGGGAACAAAAAAGATGTGGAGG 123
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 207 GCGCCGCGAAACCTTCCGGTGATGGAACGACGTCGGACGGGAACAAAAAAGATGTGGAGG 266
Query 124 AGGAGAGGAAAGACGGTGAAGGTACGAAGGAGTTAGAAAAAGTTGaaaaaaaaaTTATCG 183
| |||||||| ||||||||||| | || |||| ||||||| |||| |||||| ||||||
Sbjct 267 AAGAGAGGAAGGACGGTGAAGGAAAGAGGGAGATAGAAAACGTTGGAAAAAATTTTATCG 326
Query 184 AATCGTTAATGGAAGCCTTTTGCTCGGTTTCAATGGAGGAAGCGATGGCTGCTTATAAAG 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 327 AATCGTTAATGGAAGCCTTTTGCTCGGTTTCAATGGAGGAAGCGATGGCTGCTTATAAGG 386
Query 244 AAGCAGGCGGAGATCTGAACAAAGCCGCTGAGATTTTGTCGGATCTGGTGGAAAGCGGGG 303
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 387 AAGCAGGCGGAGATCTGAACAAAGCCGCTGAGATTTTATCGGATCTGGTGGAAAGCGGTG 446
Query 304 ATGATCCGTCGACGAGTTCGGTGGCGAGTGGTTCTTCGGGTCAGGAGACCGCGTCTACCT 363
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 447 ATGATCCGTCGACGAGTTCGGTGGCGAGTGGTTCTTCGGGTCAGGAAACAGCGTCTACCT 506
Query 364 CTGAGTATGGGGCTGGTTCAAGCTCTAGCTGTAGCGAAGATTTGACTAGAGATAGATGGT 423
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 507 CTGAGTATGGGGCAGGGTCAAGTTCTAGCTGTAGCGAAGATTTGACTAGAGATAGATGGT 566
Query 424 TTAAGGGAAACAAGCAGAGTAGAGTTATTGCTGCTACAGGGATGGTTTCTTCTGTGATTG 483
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 TTAAGGGAAGCAAGCAGAGTAGAGTTATTGCTGCTACAGGGATGGTTTCTTCTGTGATTG 626
Query 484 CTAAGGATTACTTGAAGCCAAACCCTGTGCGAAAAGAGTTTCCTATGATGGAAAGGTCTA 543
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 627 CGAAGGATTACTTGAAGCCAAACCCTGTGCGAAAAGAGTTTCCTATGATGGAACGGTCTA 686
Query 544 AAGAGTTCTGTGGGAACGGGAAAAAAGCTGCGGATAGAGAGAAAGCTGAACAGTTTCTGA 603
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 687 AAGAGCTCTGTGGGAACGGGAAAAAAGCTGCGGATAGAGAGAAAGCTGAACAG-TTCTTA 745
Query 604 A-TTCAATGCTTGGAGATGATTGCGATCTTAGCATGGCTGTTGTTAGAGATGTTTTGTGT 662
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 746 AGTTCAATGCTTGGAGATGATTGCGAGCTTAGCATGGCTGTTGTTAGAGATGTTTTGTGT 805
Query 663 CAATGTGGCTATGATGTCGACATGGCTTTGAATGTCTTGCTTGACATGTCTTCTTCATCA 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 CAATGTGGCTATGATGTCGACATGGCTTTGAATGTCTTGCTTGACATGTCTTCTTCATCA 865
Query 723 ACTGATGATTCATTGAGTGGTAAATGTTTCGGCATAGGCGCCAGCGGTAGTCTGGCAGAG 782
|||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||
Sbjct 866 ACTGATGATTCATTGAGTGGTAAATGTTTCGGCATAGGAGTCAGCGATAGTCTGGCAGAG 925
Query 783 ACATCTTTTGATACTGATACTTCTGAAAGTGAACTTTTCTGGGGTGTAGA-TA--GTCAA 839
||||||||||||||||||||||||| |||||||||||||||||| ||| || |||||
Sbjct 926 TCATCTTTTGATACTGATACTTCTGATTGTGAACTTTTCTGGGGTGGAGACTATAGTCAA 985
Query 840 AGGGATTACGCAAAAGCTCTCATGAGTTCTGAAGATCCTTTTGCAACTACCCAAGGAATT 899
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 986 AGGGACTACGCAAAAGCTCTCATGAGTTCTCAAGATCCTTTTGCAACTACCCAAGGAATT 1045
Query 900 GATGAGCTTGGTCTTCCACAAAAAGTGTTGGAGTCTCTGTTCAACATTCGCCAGAGTCCT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1046 GATGAGCTTGGTCTTCCACAAAAAGTGTTGGAGTCTCTGTTCAACATTCGCCAGAATCCT 1105
Query 960 AAACATGAACCAAAGACAATGAGTTGGAGGAATGTGGCAAAGAAAATGCAGTCACTTGGC 1019
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 AAACATGAATCAAAGACAACGAGTTGGAGGAATGTGGCAAAGAAAATGCAGTCACTTGGC 1165
Query 1020 ATTGATGCTTCTTCATCTAGTGGGGATGAGCCTCAGCCTAATACGTTTGTGAAGGATGAC 1079
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1166 ATTGATGCTTCTTCATCTAGTGGGGAAGAGCCTCACCCTAATACGTTTGTGAAGGATGAC 1225
Query 1080 AGTTATCATGAACTTAGAAAAGGTGCAAATGACCAGTGGAATGTTACGAAGTCCTACTAT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 AGTTATCATGAACTTAGAAAAGGTGCAAATGACCAGTGGAATGTTACGAAGTCCTACTAT 1285
Query 1140 CAAAAAGCTGCCGAAGCATATTCAAAAGGAGGGAGGGCTCATGCAGCTTACCTTTCTGAC 1199
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1286 CAAAAAGCTGCCGAAGCATATTCGAAAGGAGGGAGGGCTCATGCGGCTTACCTTTCTGAC 1345
Query 1200 AAGGGGAGGGTGGCATCTAAATTAGCTCAACGGGCTGATGAGAGGGCAAGCCAAGATATA 1259
||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1346 AAGGGAAGAGTGGCATCTAAACAAGCTCAACGGGCTGATGAGAGGGCAAGCCAAGATATA 1405
Query 1260 TTCGTTGCAAGAAACAAAGGTATAGAGAATGTGGTAACCATTGATCTGCATGGTCAGCAT 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 TTCGTTGCAAGAAACAAAGGTATAGAGAATGTGGTAACCATTGATCTGCATGGTCAGCAT 1465
Query 1320 GTTAAACAAGCAATGAAGCTACTGAAGCTACATCTCTTATTTGGATCATATGTGCCTTCC 1379
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1466 GTTAAACCAGCAATGAAGCTACTGAAGCTACATCTCTTATTTGGATCATATGTTCCTTCC 1525
Query 1380 ATTCAGACACTACGAGTGATCACAGGATGTGGAGCTTCTGGGTTTGGAAAGTCTAAGGTG 1439
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1526 ATTCAGACTCTACGAGTGATCACAGGATGTGGAGCTTCTGGGTTTGGGAAGTCTAAGGTG 1585
Query 1440 AAACAATCAGT 1450
|||||||||||
Sbjct 1586 AAACAATCAGT 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77509641480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5