BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950597
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58784.1 | Symbols: | Undecaprenyl pyrophosphate synthetase... 1103 0.0
> AT5G58784.1 | Symbols: | Undecaprenyl pyrophosphate synthetase
family protein | chr5:23739950-23741279 REVERSE LENGTH=921
Length=921
Score = 1103 bits (597), Expect = 0.0
Identities = 696/743 (94%), Gaps = 9/743 (1%)
Strand=Plus/Plus
Query 20 CAATGGGAGAGAAAGAGAAACGAGCGAGCAATAGAAAAATGCCAAAGCATGTGGCCGTTA 79
|||||||||||||| ||||||||| ||| || | | |||||||||||||||||| ||||
Sbjct 185 CAATGGGAGAGAAACAGAAACGAGGGAG-AA-A-TATAATGCCAAAGCATGTGGCGGTTA 241
Query 80 TATTGGACGGAAACAGACGTTGGGCAGAGAAACGAGGACTTGGTACATCCGAAGGCCACG 139
||||||||||||||||||||||||| || ||||||||||| || ||||| ||||||||||
Sbjct 242 TATTGGACGGAAACAGACGTTGGGCTGAAAAACGAGGACTCGGGACATCGGAAGGCCACG 301
Query 140 AGGCCGGAGCTAGAAGGCT-ATTGGAGAATGCTAAGGATTGTTTCGCAATGGGGACAAAT 198
|||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||
Sbjct 302 AGGCCGGAGCGAGAAGGCTCA-TGGAGAATGCTAAGGATTGTTTCGCTATGGGGACAAAC 360
Query 199 ACTATCTCACTCTTTGCTTTCTCCACCGAAAATTGGGAAAGACCAGAGGATGAAGTTAAC 258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACTATCTCACTCTTTGCTTTCTCCACCGAAAATTGGGAAAGACCAGAGGATGAAGTTAAG 420
Query 259 TGCTTGATGGCCTTGTTTGAGAAACACTTTAG-GTCTGAGATGCCTTTCTTCCAAAGAGA 317
|||||||||||||||||||||||| |||| || |||||| ||||||| | ||| ||| ||
Sbjct 421 TGCTTGATGGCCTTGTTTGAGAAATACTT-AGCGTCTGATATGCCTTACCTCCGAAGTGA 479
Query 318 TAAGATCAAGATCTTAGTTATCGGGAACCGTGCAAAAATCCCTGAGTCGCTTCGAGGTTT 377
|||||||||||||| ||||||||||||||| ||||| |||| |||||||||| ||||||
Sbjct 480 TAAGATCAAGATCTCGGTTATCGGGAACCGTACAAAACTCCCCGAGTCGCTTCTAGGTTT 539
Query 378 GATAGAAGAGGTAGAGGAAGCTACAAAGAGCTACGAAGGGAAGAATCTCATTATAGCAAT 437
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 GATAGAAGAGGTAGAGGAAGCTACAAAGAGTTACGAAGGGAAGAATCTCATTATAGCAAT 599
Query 438 AGACTATAGTGGAAGATTTGACATCTTACAAGCATGCAAAAGTCTTGCAACA-AAAGTGA 496
||||||||||||||||| ||| |||||||||||||||||||||||||||| | |||||||
Sbjct 600 AGACTATAGTGGAAGATATGATATCTTACAAGCATGCAAAAGTCTTGCAA-ATAAAGTGA 658
Query 497 AAGACGGGCTGATTCAAGTGGAGGACATCAACGAGGAGGCGATGGAGAAAGAGTTGTTGA 556
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 659 AAGACGGGCTGATTCAAGTGGAGGACATTAACGAGAAGGCGATGGAGAAAGAGTTGTTGA 718
Query 557 CAAAATGTAGCGAATACCCAAACCCTGACCTGTTGATCAGAACAAGTGGAGAGCAAAGGA 616
|||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 719 CAAAGTGTAGCGAATTCCCAAACCCTGACCTGTTGATCAGAACAAGCGGAGAGCAAAGGA 778
Query 617 TCAGTAACTTCTTCTTATGGCAATCTGCTTACACTGAGCTTTACTTTCCTACTGTTTTGT 676
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 779 TCAGTAACTTCTTTTTATGGCAATCTGCTTACACTGAGCTTTACTTTCCAACTGTTTTGT 838
Query 677 GGCCTGATTTTGGTGAAGCTGAGTATCTTGAGGCCTTGACTTGGTATCAACAAAGGCAGA 736
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 839 GGCCTGATTTTGGCGAAGCTGAGTATCTTGAGGCCTTGACTTGGTATCAGCAAAGGCAGA 898
Query 737 GGCGATTCGGTCGACGAGTTTAA 759
|||||||||||||||||||||||
Sbjct 899 GGCGATTCGGTCGACGAGTTTAA 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37876546838
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5