BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950601
Length=270
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19590.1 | Symbols: BUB3.1 | Transducin/WD40 repeat-like sup... 134 5e-31
> AT3G19590.1 | Symbols: BUB3.1 | Transducin/WD40 repeat-like superfamily
protein | chr3:6805631-6808593 FORWARD LENGTH=1409
Length=1409
Score = 134 bits (72), Expect = 5e-31
Identities = 100/112 (89%), Gaps = 7/112 (6%)
Strand=Plus/Plus
Query 1 TTTGTGATCTTCAACGGGAAAAAT---GACT-TCAACTCCGTCCGCCGGTCGTGAGCTCT 56
|||||||||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 146 TTTGTGATCTTCAACGGGAAAAATGACGACTGT-GACTCCGTCCGCCGGTCGTGAGCTCT 204
Query 57 CGAATCCGCCGTCCGTCGGCTTTTCCAATCTCCGATTTTCCA-TAACACGTG 107
||||||||||||||| |||| |||| |||||||||||||| | ||||| |||
Sbjct 205 CGAATCCGCCGTCCGACGGCATTTCTAATCTCCGATTTTCTAATAACA-GTG 255
Score = 128 bits (69), Expect = 3e-29
Identities = 75/78 (96%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 104 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGGGAGTTCTTACATGGCGGA 163
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 285 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGAGAGTTCTTACATGGCGGA 344
Query 164 GTAGTGCTCGATTGCTGT 181
| ||| ||||||||||||
Sbjct 345 GCAGTACTCGATTGCTGT 362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12365866254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5