BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950614
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58890.1 | Symbols: AGL82 | AGAMOUS-like 82 | chr5:23780832-... 1238 0.0
> AT5G58890.1 | Symbols: AGL82 | AGAMOUS-like 82 | chr5:23780832-23781716
FORWARD LENGTH=885
Length=885
Score = 1238 bits (670), Expect = 0.0
Identities = 799/861 (93%), Gaps = 9/861 (1%)
Strand=Plus/Plus
Query 39 GACCTACAAAGGATAGCGAACGATAAGACAAGGATAACAACTTACAAGAAGAGGAAAGCT 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 GACCTACAAAGGATAGCGAACGATAAGACAAGGATAACAACTTACAAGAAGAGGAAAGCT 78
Query 99 AGTCTTTACAAGAAGGCACAAGAGTTCTCAACTCTCTGCGGCGTCCAGACATGTCTCATC 158
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 79 AGTCTTTACAAGAAGGCACAAGAGTTCTCAACTCTCTGCGGCGTCGAGACATGTCTCATC 138
Query 159 GTCTACGGTCCCACGAAGGCTACCGATGAGGTGGTTCCCGAGCCAGAGATATGGCCGAGG 218
|||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| |
Sbjct 139 GTCTACGGTCCCACGAAGGCTACCGATGTGGTGATTTCCGAGCCAGAGATATGGCCGAAG 198
Query 219 GACGAGACCAACGTCAGGGACATCATACGCAAGTACAAAGACACAGTGTCGACCAGCTGC 278
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 199 GACGAGACCAAAGTCAGGGCCATCATACGCAAGTACAAAGACACAGTGTCGACCAGCTGC 258
Query 279 AGAAAAGAAACCAACGTGGAGACTTTCGTTAACGATTTAGGTAA-GACAAACGAGGTGGA 337
|| |||||||||||||||||||||||||| |||||| |||| || | |||||||||||
Sbjct 259 AGGAAAGAAACCAACGTGGAGACTTTCGTCAACGATGTAGGGAAAGG-AAACGAGGTGGT 317
Query 338 GACTAAAAAGAGAGTGAAGCGTGAGAATAAGTAT-CGTAGTTGGGAGGAGAAGCTAGACA 396
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 318 GACTAAAAAGAGAGTGAAGCGTGAGAATAAGTATTC-TAGTTGGGAGGAGAAGCTAGACA 376
Query 397 AGTGTTCACGAGAGCAACTACATGAGATTTTCTGTGCCGTGGATAAAAAGTTACATGAAG 456
|||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||
Sbjct 377 AGTGTTCACGAGAGCAACTACATGGGATTTTCTGTGCCGTGGATAGCAAGTTAAATGAAG 436
Query 457 CTGTAATGAGACAGGATCTTAGTATGTATAGGGTTCATCATCAAGCCATGGACACACCAA 516
|||||| ||||||||| | |||||||| ||||||| |||||||||||||||||||||||
Sbjct 437 CTGTAACGAGACAGGAGCGTAGTATGTTTAGGGTTAATCATCAAGCCATGGACACACCAT 496
Query 517 TCCCGCAGAATTTTATGGATCAACATTTCATGCCACAGTATTTTCATGAGCAGCCACAGT 576
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 497 TCCCGCAGAATTTAATGGACCAACAATTCATGCCACAGTATTTTCATGAGCAGCCACAGT 556
Query 577 TTCAAGGCTTCCCCAATAACTTT-AATAATATGGGTTTCTCGTTAATCTCGCCTCATGAT 635
||||||||||||| ||||| ||| |||||||||||||||||||| || || |||||||||
Sbjct 557 TTCAAGGCTTCCCTAATAA-TTTCAATAATATGGGTTTCTCGTTGATTTCACCTCATGAT 615
Query 636 GGTCAGATTCAAATGGACCCAAATCTCATGGAGAACTGGAGAGACTTAGCTTTAACACAA 695
||||||||||||||||||||||||||||||||||| |||| ||||| ||||| || |||
Sbjct 616 GGTCAGATTCAAATGGACCCAAATCTCATGGAGAAGTGGACCGACTTGGCTTTGACTCAA 675
Query 696 AGCTTGATGATGTCAAAGGGAAACGCTGGTACTCAATTGATGCAGATGCAAGCACAACCT 755
||||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||
Sbjct 676 AGCTTGATGATGTCAAAGGGAAACGATGGTACTCAATTCATGCAGAGGCAAGAACAACCA 735
Query 756 TATTACAATCGTGAACCGATTGTACCGAGGTCTGCGGGTTTCAATGTTAATCCGTTAACG 815
|| || |||||||||| | ||||| |||||||||| |||||||||||||| ||||| | |
Sbjct 736 TACTATAATCGTGAACAGGTTGTATCGAGGTCTGCAGGTTTCAATGTTAACCCGTTTATG 795
Query 816 GGATATCAAGTCCCGTTTAATATTCCT--T-GGAGGTTATCGGGAAATCAAGTTGAAGAT 872
||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| ||
Sbjct 796 GGATATCAAGTCCCGTTTAATATTCCTAATTGGAGATTATCGGGAAATCAAGTTGAAAAT 855
Query 873 TGGGAGCTATCAGGGAAGAAA 893
|||||||| ||||||||||||
Sbjct 856 TGGGAGCTTTCAGGGAAGAAA 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45060029859
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5