BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950617

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G58920.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   760    0.0  


> AT5G58920.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:23793129-23794245 
FORWARD LENGTH=830
Length=830

 Score =  760 bits (411),  Expect = 0.0
 Identities = 492/531 (93%), Gaps = 5/531 (1%)
 Strand=Plus/Plus

Query  3    AGCTCTCCGGGGAAGAAGATGGTGCGGAAACAGTTTCAACAGGCTAAAACTGGAATAGAG  62
            ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  93   AGCTCCCCGGAGAAGAAGATGGTGCGGAAACAGTTTCAACAGGCTAAAACTGGAATAGAG  152

Query  63   GCTTTGAAGTCAATGGATGCTAACAAGTACCTGAAGAAGGTTGGGTTAGGGCGTGACGAT  122
            || ||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct  153  GCATTGAAGTCAATGGATGCTAACAACTACTTGAAGAAGGTTGGATTAGGGCGTGACGAT  212

Query  123  ATGtttttttGGAAACAAGTGGGAAAAGCATTGCTTTGCACTTACACAATCTTTGGTATC  182
            ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct  213  ATGTTCTTTTGGAAACAAGTGGGAAAAGCATTGCTATGCACTTACACAATCTTTGGTATG  272

Query  183  GCTTGGATATACAATGAAACGTCTCCTTTGGGTTGGTGGACGTTGAAGCCGAGACCAAAG  242
            |||||||| |||||||||||||||||||| |||||||||||| ||||||| |||||||||
Sbjct  273  GCTTGGATTTACAATGAAACGTCTCCTTTAGGTTGGTGGACGCTGAAGCCAAGACCAAAG  332

Query  243  GAGGAGAGAGAGTTGGCTCATTTGTATGAGCGGCGTGAGTTTCCTTATCCTGGTGATACA  302
            || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  333  GAAGAGAGAGAATTGGCTCATTTGTATGAGCGGCGTGAGTTTCCTTATCCTGGTGATACA  392

Query  303  GAGGCAATGGAGGATTTTGTTGCAAAGGGAGGGA-TGATCGGTACAGCGATCGGGCCTAA  361
            ||||| ||||||||||||||||||||||| |||| |||| ||||| || || || || ||
Sbjct  393  GAGGCTATGGAGGATTTTGTTGCAAAGGG-GGGAATGATTGGTACTGCAATTGGACCGAA  451

Query  362  AGGGATTGTTGAGTCCGAAGGTGAAGCCGATAATTATCAAAAGGAAATGGAGAAGAAGAA  421
            ||| |||||||||||||||||||| || |||||||| || ||||||||||||||||||||
Sbjct  452  AGGAATTGTTGAGTCCGAAGGTGAGGCTGATAATTACCAGAAGGAAATGGAGAAGAAGAA  511

Query  422  GTTTGATAAAGAGGCTCAGAAACTGTGGCTGAGAATGAGGAATGAGGTCATGACTGAACT  481
            |||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct  512  GTTTGATAAAGAGGCTCAGAAACTGTGGTTGAGAATGAGGAATGAGGTTATTACTGAACT  571

Query  482  TCAAGAGAAAGGGTATGATCTTGAAT--G-AAGTGCAAGAGAGTTTTGATA  529
            ||||||||||||| || |||||||||  | |||||||| || |||||||||
Sbjct  572  TCAAGAGAAAGGGCATAATCTTGAATAAGGAAGTGCAATAGGGTTTTGATA  622



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25318010088


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5