BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950617 Length=529 Score E Sequences producing significant alignments: (Bits) Value AT5G58920.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 760 0.0 > AT5G58920.1 | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:23793129-23794245 FORWARD LENGTH=830 Length=830 Score = 760 bits (411), Expect = 0.0 Identities = 492/531 (93%), Gaps = 5/531 (1%) Strand=Plus/Plus Query 3 AGCTCTCCGGGGAAGAAGATGGTGCGGAAACAGTTTCAACAGGCTAAAACTGGAATAGAG 62 ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 93 AGCTCCCCGGAGAAGAAGATGGTGCGGAAACAGTTTCAACAGGCTAAAACTGGAATAGAG 152 Query 63 GCTTTGAAGTCAATGGATGCTAACAAGTACCTGAAGAAGGTTGGGTTAGGGCGTGACGAT 122 || ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| Sbjct 153 GCATTGAAGTCAATGGATGCTAACAACTACTTGAAGAAGGTTGGATTAGGGCGTGACGAT 212 Query 123 ATGtttttttGGAAACAAGTGGGAAAAGCATTGCTTTGCACTTACACAATCTTTGGTATC 182 ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 213 ATGTTCTTTTGGAAACAAGTGGGAAAAGCATTGCTATGCACTTACACAATCTTTGGTATG 272 Query 183 GCTTGGATATACAATGAAACGTCTCCTTTGGGTTGGTGGACGTTGAAGCCGAGACCAAAG 242 |||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||| Sbjct 273 GCTTGGATTTACAATGAAACGTCTCCTTTAGGTTGGTGGACGCTGAAGCCAAGACCAAAG 332 Query 243 GAGGAGAGAGAGTTGGCTCATTTGTATGAGCGGCGTGAGTTTCCTTATCCTGGTGATACA 302 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 333 GAAGAGAGAGAATTGGCTCATTTGTATGAGCGGCGTGAGTTTCCTTATCCTGGTGATACA 392 Query 303 GAGGCAATGGAGGATTTTGTTGCAAAGGGAGGGA-TGATCGGTACAGCGATCGGGCCTAA 361 ||||| ||||||||||||||||||||||| |||| |||| ||||| || || || || || Sbjct 393 GAGGCTATGGAGGATTTTGTTGCAAAGGG-GGGAATGATTGGTACTGCAATTGGACCGAA 451 Query 362 AGGGATTGTTGAGTCCGAAGGTGAAGCCGATAATTATCAAAAGGAAATGGAGAAGAAGAA 421 ||| |||||||||||||||||||| || |||||||| || |||||||||||||||||||| Sbjct 452 AGGAATTGTTGAGTCCGAAGGTGAGGCTGATAATTACCAGAAGGAAATGGAGAAGAAGAA 511 Query 422 GTTTGATAAAGAGGCTCAGAAACTGTGGCTGAGAATGAGGAATGAGGTCATGACTGAACT 481 |||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||| Sbjct 512 GTTTGATAAAGAGGCTCAGAAACTGTGGTTGAGAATGAGGAATGAGGTTATTACTGAACT 571 Query 482 TCAAGAGAAAGGGTATGATCTTGAAT--G-AAGTGCAAGAGAGTTTTGATA 529 ||||||||||||| || ||||||||| | |||||||| || ||||||||| Sbjct 572 TCAAGAGAAAGGGCATAATCTTGAATAAGGAAGTGCAATAGGGTTTTGATA 622 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25318010088 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5