BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950621
Length=664
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64410.1 | Symbols: ATOPT4, OPT4 | oligopeptide transporter ... 821 0.0
> AT5G64410.1 | Symbols: ATOPT4, OPT4 | oligopeptide transporter
4 | chr5:25750845-25755052 REVERSE LENGTH=2344
Length=2344
Score = 821 bits (444), Expect = 0.0
Identities = 500/527 (95%), Gaps = 4/527 (1%)
Strand=Plus/Plus
Query 1 AAGATATACACACTAGGTTAATGAAGAGATATAAAGACATACCTTCATGGTGGTTTTACT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AAGATATACACACTAGGTTAATGAAGAGATATAAAGACATACCTTCATGGTGGTTTTACT 1318
Query 61 TGATGTTGGCTACTACACTACTTATCTCTCTTGCTTTATGTGTCTTCTTGAACGATGAGG 120
||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1319 CAATGTTGGCTGCGACACTACTTATCTCTCTTGCATTATGTGTTTTCTTGAACGATGAGG 1378
Query 121 TTCAAATGCCTTGGTGGGGACTTGTGTTCGCAAGCGCAATGGCTTTCACCTTCACACTTC 180
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
Sbjct 1379 TTCAAATGCCTTGGTGGGGACTTGTGTTCGCAAGCGCGATGGCTTTCGTCTTCACACTCC 1438
Query 181 CAATCAGCATTATAACGGCAACAACTAACCAAACACCAGGG-TTGAATATAATCACGGAG 239
| || ||||| ||||| |||||||||||||||||||| ||| ||||||||||| || |||
Sbjct 1439 CGATAAGCATCATAACCGCAACAACTAACCAAACACC-GGGATTGAATATAATAACAGAG 1497
Query 240 TACGCAATGGGAATCATTTACCCGGGACGACCTATCGCAAACGTATGCTTCAAAGTCTAT 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TACGCAATGGGACTCATTTACCCGGGACGACCTATCGCAAACGTATGCTTCAAAGTCTAT 1557
Query 300 GGATACATGAGTATGGCACAAGCTGTCTCTTTCTTAAATGACTTCAAACTTGGTCACTT- 358
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1558 GGATACATGAGTATGGCACAAGCAGTCTCTTTCTTAAATGACTTCAAACTTGGTCA-TTA 1616
Query 359 CATGAAGATCCCACCAAGATCCATGTTCTTGGTTCAATTCATCGGTACAATTCTTGCCGG 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 CATGAAGATCCCACCTAGATCCATGTTCTTGGTTCAATTCATCGGTACAATTCTTGCCGG 1676
Query 419 AACAATCAACATAACGGTTGCATGGTGGCAATTAACCTCTATCAAAAACATATGTCAAGA 478
|||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1677 AACAATCAACATAACGGTCGCATGGTGGCAGTTAAACTCTATCAAAAACATATGTCAAGA 1736
Query 479 GGAACTTCTACCTCCCAACAGTCCATGGACATGTCCTGGTGACCGTG 525
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1737 GGAACTTCTACCTCCCAACAGTCCATGGACATGTCCGGGTGACCGTG 1783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099619933
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5