BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950622
Length=688
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64420.1 | Symbols: | DNA polymerase V family | chr5:257563... 937 0.0
> AT5G64420.1 | Symbols: | DNA polymerase V family | chr5:25756332-25761341
FORWARD LENGTH=4224
Length=4224
Score = 937 bits (507), Expect = 0.0
Identities = 589/629 (94%), Gaps = 4/629 (1%)
Strand=Plus/Plus
Query 3 AATTTCTGTGAATTTTTTATGGAAGGAGCCCTACTTTCTTCATCTCATGATCGCAAGCAT 62
|||||||| ||| ||||||||||||||| ||||||||||||| |||||| ||||||||||
Sbjct 1420 AATTTCTGCGAAGTTTTTATGGAAGGAGACCTACTTTCTTCAACTCATGTTCGCAAGCAT 1479
Query 63 TTGGCATTTGATATCCTGCTTCTTCTTCTTCCAAAGCTTCCTGTAAGTTTCGTGCAACAT 122
||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 1480 TTGGCATTTGATATCCTGCTTCTTCTTCTTCCAAAGCTTCCTGCAAGTTTTATCCAACAT 1539
Query 123 GTTTTGTC-CTTCAAATTTGTTCAGTGCCTCATGGATATACTCTCCACAAAGGACTCTTG 181
|| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 GTATTGTCGC-TCAAATTTGTTCAGTGCCTCATGGATATACTCTCCACAAAGGACTCTTG 1598
Query 182 GTTGCATAAAGTTGCAACCCATTTTCTTGTGGAGTTAATTGATTGGGTGAAAGACGACGA 241
||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 1599 GTTGCATAAAGTTGCCACCCATTTTCTTGTCGAGTTAATGGATTGGGTGAAAGATGACGA 1658
Query 242 TACCAAGAGGGTGGCTGTTACAATGGCTCTTCAGAAACACAGTGAAGGGAAATCTGATAA 301
||||||||||||||| |||||||||||||| ||||||||||| ||||| |||| ||||||
Sbjct 1659 TACCAAGAGGGTGGCCGTTACAATGGCTCTCCAGAAACACAGCGAAGGAAAATTTGATAA 1718
Query 302 TATTACGCGTACAAAAACTGTTAAAGATCTAGCTGCAGAGTTTGAAACTGAAGATGGTTG 361
||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1719 TATTACGCGGACAAAAACTGTTAAAGTTCTAGCTGCAGAGCTTGAAACTGAAGATGGTTG 1778
Query 362 CACACTTTTTCTCCAGAACTTGATGAATTTGTTTGTGGATGAACAGCATGTTCCTGAGGA 421
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1779 CACACTTTATCTCCAGAACTTGATGAATTTGTTTGTGGATGAACAGCATGTTCCTGAAGA 1838
Query 422 ACCTTCAAATATGAAATGGTCCCTAGAACCTTGCTCTTTGAATTCAGATCAGAGTCAAAC 481
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 ATCTTCAAATATGAAATGGTCCCTAGAACCTTGCTCTTTGAATTCAGATCAGAGTCAAAC 1898
Query 482 AACAGATGACAATTCTGAGA-TAGGTTCAAACGAGGAGAAGGATTCAGTTGGGACAGCTG 540
||| ||||| |||||||| | | |||||||| |||||||||||||||||||| ||| | |
Sbjct 1899 AACGGATGATAATTCTGACAAT-GGTTCAAATGAGGAGAAGGATTCAGTTGGAACAACCG 1957
Query 541 GAAACTCGGATCTTCTGAAAAGCTGGGTCATTGAATCTCTCCCTGGCATCTTAAAACATA 600
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1958 GAAACTCGGATGTTCTGAAAAGCTGGGTCATTGAATCTCTCCCTGGCATCTTAAAACATG 2017
Query 601 CTAAATTGGCCCCCGAGGCGAAACTGCGA 629
|||||||| |||| |||||||||||||||
Sbjct 2018 CTAAATTGTCCCCTGAGGCGAAACTGCGA 2046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33305239461
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5