BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950645
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59210.1 | Symbols: | myosin heavy chain-related | chr5:238... 2180 0.0
> AT5G59210.1 | Symbols: | myosin heavy chain-related | chr5:23890606-23893665
REVERSE LENGTH=1547
Length=1547
Score = 2180 bits (1180), Expect = 0.0
Identities = 1294/1349 (96%), Gaps = 7/1349 (1%)
Strand=Plus/Plus
Query 6 GGA-AGGAATCATACCATGGACTCGCACCACGCGTCTCTAGGTCGCCGGACTTTGGAAGA 64
||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 31 GGAGAGGAATCATACCATGGAATCGCACCACGCGTCTCTAGGTCGCCGTACTTTGGAAGA 90
Query 65 GATTCGTCAAAAGAGAGCTGCTCAAAGGCTAAGCAAAACTTCTTCAGGCCCAGATCTTAG 124
|||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||
Sbjct 91 GATTCGTCAAAAGAGAGCAGCTCAAAGGCTAAGCAAAGCTTCTTCAGGTCCAGATCTTAG 150
Query 125 CGAAATTCCAAATCCTGCCGATTTCCCAGTGATCAGAAAATCTGAGAGTGGAAATCGGCT 184
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 151 TGAAATTCCCAATCCTGCCGATTTCCCAGTGATCAGAAAATCTGAGAGCGGAAATCGACT 210
Query 185 TTCTGAGACAGATGTTGGTGCTTTATATTCCCAGCTTAAAGAACTGCAGAAGAAGAATGC 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 TTCTGAGACAGATGTTGGTGCTTTATATTCCCAGCTTAAAGAACTGCAGAAGAAGAATGC 270
Query 245 AGATATGGAGGAGCGCAACAAGATATTGTCCTCAAAGCTTCAAACAAAGGAAGTTGAGAA 304
||| ||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||
Sbjct 271 AGAAATGGAGGAGCGCAACAAAATTTTGTCTTCAAAGCTTCAAACGAAGGAAGTTGAGAA 330
Query 305 TGAATCACTTGAGACTCGGTTGAATGTGCTGGAACAAAACACAGTGCCATCTCTGAGAAA 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 TGAATCACTTGAGACTCGGTTGAATGTGCTGGAACAAAACACAGTGCCATCTCTGAGAAA 390
Query 365 AGCCCTCAAGGAAATTGCAATGGAGAAAGATGCTGCTGTTGTTTTACGAGAGGATCTCTC 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 AGCCCTCAAGGAAATTGCAATGGAGAAAGATGCTGCTGTTGTTTTACGAGAGGATCTCTC 450
Query 425 AGCTCAAGTTAGGACTCTTAAGAGACGTGTTAAAGAGGCAGAGGAGGAACAATATCGAGC 484
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 451 AGCTCAAGTTAGGACTCTTAAGAGACGTGTTAATCAGGCAGAGGAGGAACAATATCGAGC 510
Query 485 TGAGGAAGATGCGGCATCTCTGAGAGCAGAGCTTAACTCGATACAACAGCAAGCAATGGG 544
|||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 511 TGAGGAAGATGCAGCATCTCTTAGAGCAGAGCTTAATTCGATACAACAGCAAGCAATGGG 570
Query 545 TACTTCGTTTACTGGCCTGTCGCCAATGGGAGTTTCCTCAGACCAACTACCAATATTAGA 604
|| ||| ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 571 TAATTCATTTGCTGGCATGTCGCCAATGGGAGTTTCCCCAGACCAACTACCAATATTAGA 630
Query 605 AAAGGAGATGGCTAACCTAAAACTAGAATTACAGAAAGAATCAGTGTTAAGGCAGCAAGA 664
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 631 AAAGGAGATGGCTAACCTAAAACTAGAATTACAGAAAGAATCAGTGTTGAGGCAGCAAGA 690
Query 665 ACAACAGCGTTTAGCTGAAGAACAAACTCGAGTAGCTTCTTTAATGTCTGAAAAGCAGGA 724
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 ACAACATCGTTTAGCTGAAGAACAAACTCGAGTAGCTTCTTTAATGTCTGAAAAGCAGGA 750
Query 725 ACTGGAACAGAAGATTTCAGTTTTATCTAGCAGGGCCTCAGAAGTATCAGAGTCTGGTCA 784
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 751 ACTGGAACAGAAAATTTCAGTTTTATCCAGCAGGGCCTCAGAAGTATCAGAGTCTGGTCA 810
Query 785 AAAGGCATTGTCAGTGGAAGATAAAGAAAAACTCGAGAAGCAGTTGCATGATATGGCTGT 844
||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 AAAAGTATTTTCAGTGGAAGATAAAGAAAAACTCGAGAAGCAGTTGCATGATATGGCTGT 870
Query 845 TGCACTTGAAAGATTAGAGAGTAGTAGGCAAAAACTTCTCATGGAGATTGACAACCAATC 904
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 871 TGCACTTGAAAGATTAGAGAGTAGTAGGCAAAAACTTCTCATGGAAATTGACAACCAATC 930
Query 905 ATCTGAAATAGAGAGGCTTTTTGAGGAGAACTCGAACCTCTCGGCTTCATATCAAGAATC 964
|||||||||||||| ||| |||||||| |||||||||||||| ||||| |||||||||||
Sbjct 931 ATCTGAAATAGAGAAGCTATTTGAGGAAAACTCGAACCTCTCAGCTTCGTATCAAGAATC 990
Query 965 AATCAACGTATCAAATCAGTGGGAGAATCAAGTGAAAGAATGTCTGAAGCAAAACGTAGA 1024
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 AATCAACATATCAAATCAGTGGGAGAATCAAGTGAAAGAATGTCTGAAGCAAAACGTAGA 1050
Query 1025 ACTCCGTGAAGTTCTGGACAAGTTAAGAACAGAACAAGCTGGTGCTCTTTCACGAAAGTC 1084
|||||||||||||||||||||||| |||||||||||||||||| || |||||||| | |
Sbjct 1051 ACTCCGTGAAGTTCTGGACAAGTTGAGAACAGAACAAGCTGGTTCTTTTTCACGAGGGCC 1110
Query 1085 TTCAGAAATTGAGGCAAATGGGTCGCACTCGCATGGAACTGAAACTCTATCCCTCAAGGG 1144
||||||| ||||||||||||||||||| | | | |||||| |||||||||||||||||
Sbjct 1111 TTCAGAATTTGAGGCAAATGGGTCGCA-T-G---G-AACTGATACTCTATCCCTCAAGGG 1164
Query 1145 TGAACTTGCGAAAGAACAGAGCAGAGCGGAATCATTATCTGCTCAAGTTCTCCAACTCTC 1204
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1165 TGAACTTGCGAAAGAACAGAGCAGAGCGGAATCATTATCTGCTCAAGTCCTCCAACTCTC 1224
Query 1205 AGCTCAACTCCAGCAAGCAACACAAGCATACAATGGGCTTATGCGCGTCTATAAACCTGT 1264
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1225 AGCTCAACTCCAGCAAGCAACACAAGCATACAATGGGCTTATGCGCATCTATAAACCTGT 1284
Query 1265 GCTTAGAAACATAGAGAGTAGCTTAATCAAGCTGAAGCAAGATGGATCGGTTACAGTGGC 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 GCTTAGAAACATAGAGAGTAGCTTAATCAAGCTGAAGCAAGATGGATCGGTTACAGTGGC 1344
Query 1325 ACAGTGAATCAGGAACCAAGGGCACACTT 1353
|||||||||||||||||||||||||||||
Sbjct 1345 ACAGTGAATCAGGAACCAAGGGCACACTT 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66616123215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5