BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950647
Length=2122
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59190.1 | Symbols: | subtilase family protein | chr5:23885... 3179 0.0
> AT5G59190.1 | Symbols: | subtilase family protein | chr5:23885855-23888673
FORWARD LENGTH=2082
Length=2082
Score = 3179 bits (1721), Expect = 0.0
Identities = 1962/2081 (94%), Gaps = 6/2081 (0%)
Strand=Plus/Plus
Query 21 ATGGGAACACTTCCTGAGATTGAGTACTCACCACCATCTCACCATCTCAGTATGCTCCAA 80
||||||||||||||||||||| |||||||||| || ||||||||||||||||| ||||||
Sbjct 1 ATGGGAACACTTCCTGAGATTAAGTACTCACCTCCCTCTCACCATCTCAGTATACTCCAA 60
Query 81 AAACTTGTTGGCACTAATGCTGCATCGAATTTGTTGA-TTAGAAGCTATAAAAGGAGCTT 139
|||||||||||||||| |||||||||| ||||||| | ||||||| ||||||||||||||
Sbjct 61 AAACTTGTTGGCACTATTGCTGCATCGCATTTGTT-AGTTAGAAGTTATAAAAGGAGCTT 119
Query 140 CAACGGATTCGCTGCCAATCTATCTCAAGCCGAGAGTCAGAAACTGCAAAATATGAAAGA 199
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAATGGATTCGCTGCCAATCTATCTCAAGCCGAGAGTCAGAAACTGCAAAATATGAAAGA 179
Query 200 GGTAGTGTCTGTGTTTCCAAGCAAAAGTCATGAACTGACGACAACAAGATCATGGGACTT 259
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 GGTAGTGTCAGTGTTTCCAAGCAAGAGTCATGAACTGACGACAACAAGATCATGGGACTT 239
Query 260 TGTCGGATTTGGCGAGAGAGCAAAACGTGAGAGTGTGAAAGAAAGTGATGTTATTGTCGG 319
||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 240 TGTCGGATTTGGCGAGAAAGCGAGACGAGAGAGTGTGAAAGAAAGTGATGTTATTGTCGG 299
Query 320 AGTGATAGACAGCGGAATCTGGCCGGAATCTGAGAGCTTTGACGACAAAGGTTTTGGTCC 379
|||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 300 AGTGATTGACAGTGGAATCTGGCCGGAATCTGAGAGCTTTGACGACGAAGGTTTTGGTCC 359
Query 380 GCCTCCAAAGAAATGGAAAGGTTCTTGTAAAGGTGGCCTAAACTTCACTTGCAACAACAA 439
||||||||| |||||||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct 360 GCCTCCAAAAAAATGGAAAGGTTCCTGTAAAGGTGGCCTAAAATTCGCTTGCAACAACAA 419
Query 440 ACTCATCGGAGCTAGGTTTTACAACAAATTTTCTGAGTCAGCAAGAGACGAGGAAGGCCA 499
||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||||
Sbjct 420 GCTCATCGGAGCTAGGTTTTACAATAAATTTGCCGACTCAGCAAGAGATGAGGAAGGCCA 479
Query 500 TGGGACACACACTGCGTCGACGGCTGCTGGTAATGCAGTTCAAGCCGCCAGCTTTTACGG 559
||| || ||||||||||| ||||||||||||||||| |||||||| || ||||| |||||
Sbjct 480 TGGAACCCACACTGCGTCAACGGCTGCTGGTAATGCGGTTCAAGCTGCTAGCTTCTACGG 539
Query 560 CCTGGCTCAAGGTACGGCTCGTGGTGGAGTTCCCTCGGCGAGAATCGCCGCCTATAAAGT 619
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 540 TTTGGCTCAAGGTACTGCTCGTGGTGGAGTTCCCTCGGCGAGAATAGCCGCATATAAAGT 599
Query 620 CTGCTTCAAACGCTGCAACGATGTAGATATTCTGGCTGCGTTTGATGATGCCATTGCCGA 679
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTGCTTCAACCGCTGCAACGATGTAGATATTCTGGCTGCGTTTGATGATGCCATTGCCGA 659
Query 680 TGGTGTTGATGTTATCTCGATCTCAATCTCAGTCGATTACGTCTCCAATTTATTAAACGC 739
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 TGGTGTTGATGTTATCTCGATCTCAATCTCAGCCGATTACGTCTCCAATTTATTAAACGC 719
Query 740 TTCTGTAGCCATTGGTTCTTTTCACGCAATGTTGAGAGGAATCATCACGGCGGGTTCAGC 799
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 720 TTCTGTAGCCATTGGTTCTTTTCACGCAATGATGAGAGGAATCATCACGGCAGGTTCAGC 779
Query 800 TGGGAACAATGGGCCTGATCAAGGTTCGGTGGCAAATGTATCACCGTGGATGATAACCGT 859
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 780 TGGGAACAATGGGCCTGATCAAGGTTCGGTGGCTAATGTATCGCCATGGATGATAACCGT 839
Query 860 CGCTGCCAGCGCTACAGACCGGC-GTTTCATTGACAGAGTCGTTCTTGGTAACGGAAAAG 918
|| ||||||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 840 TGCAGCCAGCGGTACGGACCGGCAGTT-CATTGACAGAGTCGTTCTTGGTAACGGAAAAG 898
Query 919 CATTAACGGGTATATCAGTTAATCCATTCAATCTCAATGGGACAAAGTTCCCGATCGTTT 978
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 899 CATTAACGGGTATATCAGTTAATACATTCAATCTCAATGGGACAAAGTTCCCGATCGTTT 958
Query 979 ACGGCCAAAACGTGTCTAGAAAATGTTCCCAAGCCGAAGCCGGTTTTTGCTCAAGTGGGT 1038
|||||||||||||||| ||||| |||||||||||| ||||||||| ||| ||||||||||
Sbjct 959 ACGGCCAAAACGTGTCGAGAAATTGTTCCCAAGCCCAAGCCGGTTATTGTTCAAGTGGGT 1018
Query 1039 GTGTCGACAGCGACCTGGTCAAAGGGAAGATCGTCCTATGTGATGACTTCCTAGGATATA 1098
|||| || || || ||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 1019 GTGTGGATAGTGAGCTGGTGAAAGGGAAGATCGTTCTATGTGACGACTTCCTAGGATATA 1078
Query 1099 GAGAAGCTTACTTAGCTGGAGCCATTGGAGCCATTGCTCAAAACACATTGTTTCCAGACA 1158
|||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct 1079 GAGAAGCTTACTTAGCTGGAGCCATTGGAGTCATTGTTCAAAACACATTGCTTCCAGACA 1138
Query 1159 GCGCCTTTGTGTTTCCATTTCCTGCCTCTTCTCTTGGTTTTGAGGACTACAAATCTATCA 1218
|||| |||||| |||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1139 GCGCATTTGTGGTTCCCTTTCCTGCCTCTTCTCTGGGATTTGAGGACTACAAATCTATCA 1198
Query 1219 AGTCATACATCGTATCTGCAGAGCCTCCACAAGCGGAGATACTGAGAACCGAGGAGACAG 1278
|||||||||| | ||||||||||||||||||||| |||||||| ||||||||||||| ||
Sbjct 1199 AGTCATACATTGAATCTGCAGAGCCTCCACAAGCAGAGATACTAAGAACCGAGGAGATAG 1258
Query 1279 TTGATAGAGAAGCTCCTTATGTTCCATCTTTCTCTTCTCGCGGGCCAAGTTTCGTCATTC 1338
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1259 TAGATAGAGAAGCTCCATATGTTCCATCTTTTTCTTCTCGCGGGCCAAGTTTCGTCATTC 1318
Query 1339 AGAACCTCTTGAAGCCTGACGTAAGTGCACCTGGATTAGAGATTTTGGCTGCATTTTCTC 1398
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1319 AGAACCTCTTGAAGCCTGACGTAAGTGCACCTGGATTAGAGATTCTGGCTGCATTTTCTC 1378
Query 1399 CGGTAGCTTCTCCTTCAAGTTTATTGAACCCTGTGGACAAGAGAAGTGTGAGGTATAGTT 1458
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1379 CGGTAGCTTCTCCTTCAAGTTTTTTGAACCCTGAGGACAAGAGAAGTGTGAGGTATAGTG 1438
Query 1459 TTATGAGTGGCACATCAATGGCTTGTCCTCATGTGGCAGGTGTAGCGGCTTATGTCAAGT 1518
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TAATGAGTGGCACATCAATGGCTTGTCCTCATGTGGCAGGTGTAGCGGCTTATGTCAAGT 1498
Query 1519 CTTTTCACCCTGACTGGTCTCCCTCGGCAATCAAATCCGCTATAATGACGACCGCTACCC 1578
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1499 CTTTTCACCCCGACTGGTCTCCCTCGGCAATCAAATCCGCTATAATGACCACCGCTACCC 1558
Query 1579 CCATGAACCTTAAGAAGAACCCCGAGCAAGAATTTGCATATGGGTCAGGCCAAATTAACC 1638
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1559 CCATGAACCTTAAGAAGAACCCCGAGCAAGAATTTGCATATGGATCAGGCCAAATTAACC 1618
Query 1639 CGACCAAAGCAAGCGACCCAGGACTTGTGTATGAAGTAGAAACAGACGATTACCTCAAAA 1698
||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 1619 CGACCAAAGCAAGTGACCCCGGACTTGTATATGAAGTAGAAACAGAAGATTACCTCAAAA 1678
Query 1699 TGTTATGTGCAGAGGGTTTTGATTCAACGTCGCTCACAAAAACCTCAGGACAGAACGTCA 1758
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1679 TGTTATGTGCAGAGGGTTTTGATTCAACAACGCTCACAACAACCTCAGGACAGAACGTCA 1738
Query 1759 CTTGCTCGGAAAGAACAGAAGTCAAGAATCTGAATTACCCAACAATGACTACGTTTGTCT 1818
| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1739 CATGTTCGGAAAGAACAGAAGTCAAGGATCTGAATTACCCAACAATGACTACGTTTGTCT 1798
Query 1819 CTGCTCTTGATCCATTCAATGTCACATTTAAAAGAACCGTTACTAATGTTGGAATCCCAA 1878
|| |||||||||||||||||||||| ||||||||||| || |||||||||||| ||||||
Sbjct 1799 CTTCTCTTGATCCATTCAATGTCACGTTTAAAAGAACTGTCACTAATGTTGGATTCCCAA 1858
Query 1879 ACTCTACGTACAAGGCAAGTGTTGTTCCTCTCCAACCAGATATTCAGATTCGCATAGAAC 1938
||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1859 ACTCTACGTACAAGGCAAGTGTTGTTCCTCTCCAACCGGAGCTTCAGATTAGCATAGAAC 1918
Query 1939 CAGAAATACTGAGATTCGGTTTCTTGAAGGAGAAGAAAACGTTTGTTGTGACCATCTCTG 1998
||||||||||||||||||||||| || ||||||||||| | |||||||||||||||||||
Sbjct 1919 CAGAAATACTGAGATTCGGTTTCCTGGAGGAGAAGAAATCTTTTGTTGTGACCATCTCTG 1978
Query 1999 GTAAAGAACT-AAGGGATGGAAGTATTCTAAGTTCGTCTGTGGTTTGGTCTGATGGGAGT 2057
|||||||||| |||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1979 GTAAAGAACTGAAGG-ATGGAAGTTTTGTAAGTTCGTCTGTGGTTTGGTCTGATGGGAGT 2037
Query 2058 CACAGTGTCAGAAGCCCAATCGTTGCTTACTCAATCCAGCC 2098
|||||||||||||| ||||||||||||||||||||||||||
Sbjct 2038 CACAGTGTCAGAAGTCCAATCGTTGCTTACTCAATCCAGCC 2078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105220342320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5