BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950648
Length=575
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59180.1 | Symbols: NRPB7 | DNA-directed RNA polymerase II |... 942 0.0
> AT5G59180.1 | Symbols: NRPB7 | DNA-directed RNA polymerase II
| chr5:23883417-23885208 FORWARD LENGTH=845
Length=845
Score = 942 bits (510), Expect = 0.0
Identities = 550/569 (97%), Gaps = 3/569 (1%)
Strand=Plus/Plus
Query 7 agagagagagaAGTCGAGATGTTCTTCCACATAGTATTGGAGCGGAACATGCAGTTGCAT 66
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 65 AGAGAGAGAGAAGTCGAGATGTTTTTCCACATAGTATTGGAGCGGAACATGCAGTTGCAT 124
Query 67 CCTCGTTTCTTTGGTCGAAACCTTCGTGAAAACCTCGTATCTAAGCTCATGAAAGATGTC 126
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 125 CCTCGTTTCTTTGGTCGTAACCTAAAAGAAAACCTCGTATCTAAGCTCATGAAAGATGTC 184
Query 127 GAAGGCACTTGCAGTGGCCGTCATGGATTTGTAGTGGCGATAACTGGAATAGAGAGC-AT 185
|||||||||||||||||||| |||||||||||||||||||||||||||||||| | | ||
Sbjct 185 GAAGGCACTTGCAGTGGCCGACATGGATTTGTAGTGGCGATAACTGGAATAGATA-CAAT 243
Query 186 AGGAAAGGGTTTGATCAGAGATGGGACTGGTTTTGTCACCTTTCCAGTTAAATACCAATG 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 AGGAAAGGGTTTGATCAGAGATGGGACTGGTTTTGTCACCTTTCCAGTTAAATACCAATG 303
Query 246 CGTCGTTTTCAGACCTTTCAAAGGCGAGATTTTGGAAGCTGTTGTCACTTTGGTCAATAA 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CGTCGTTTTCAGACCTTTCAAAGGCGAGATTTTGGAAGCTGTTGTCACTTTGGTCAATAA 363
Query 306 GATGGGATTCTTCGCTGAAGCTGGCCCTGTTCAGATTTTTGTGTCCAAGCATTTGATACC 365
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 364 GATGGGATTCTTCGCTGAAGCTGGCCCTGTTCAGATTTTTGTGTCTAAGCATTTGATTCC 423
Query 366 AGATGATATGGAGTTTCAAGCTGGAGACATGCCTAATTATACTACATCAGATGGATCAGT 425
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 424 AGATGATATGGAGTTTCAAGCTGGAGACATGCCTAACTATACCACATCAGATGGATCAGT 483
Query 426 TAAGATCCAGAAGGAATGTGAAGTGAGACTAAAGATTATTGGAACAAGAGTTGATGCCAC 485
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TAAGATCCAGAAGGAGTGTGAAGTGAGACTAAAGATTATTGGAACAAGAGTTGATGCCAC 543
Query 486 TGAGATTTTTTGTGTGGGTACCATCAAAGACGATTTTTTGGGAGTCATAAACGATCCTGC 545
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 544 TGCGATTTTTTGTGTGGGTACCATCAAAGACGATTTTTTGGGAGTCATAAACGACCCTGC 603
Query 546 AGCGGCATAAAA-GTTTCGAGCAGATTTC 573
|||||||||||| ||||| ||||||||||
Sbjct 604 AGCGGCATAAAAAGTTTCAAGCAGATTTC 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27628780850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5