BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950651
Length=694
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59150.1 | Symbols: ATRABA2D, ATRAB-A2D, RABA2D | RAB GTPase... 1123 0.0
AT3G46830.1 | Symbols: ATRAB11A, ATRABA2C, ATRAB-A2C, RAB-A2C, ... 739 0.0
AT1G47595.1 | Symbols: | pseudogene, similar to Ras-related pr... 418 4e-116
AT2G04120.1 | Symbols: | pseudogene, RAS-related GTP binding p... 377 6e-104
AT4G08190.1 | Symbols: | P-loop containing nucleoside triphosp... 244 6e-64
> AT5G59150.1 | Symbols: ATRABA2D, ATRAB-A2D, RABA2D | RAB GTPase
homolog A2D | chr5:23876586-23878429 FORWARD LENGTH=1020
Length=1020
Score = 1123 bits (608), Expect = 0.0
Identities = 665/693 (96%), Gaps = 2/693 (0%)
Strand=Plus/Plus
Query 1 GGTGAGATCAAAGAGGAAAAATGGCGCATAGGGTTGAACAGGATTATGATTATTTATTTA 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 162 GGTGAGATCAAAGAGGAAAAATGGCGCATAGGGTAGAACAGGATTATGATTATTTGTTCA 221
Query 61 AGATCGTGTTGATTGGTGATTCTGGTGTTGGGAAATCAAACATCTTGTCTAGATTCACAA 120
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 222 AGATCGTGTTGATTGGTGATTCTGGTGTCGGGAAAACAAACATCTTGTCTAGATTCACAA 281
Query 121 GGAATGAGTTTTGTTTGGAATCTAAGTCCACTATTGGTGTTGAATTCGCCACCAGAACTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 GGAATGAGTTTTGTTTGGAATCTAAGTCCACTATTGGTGTTGAATTCGCCACCAGAACTC 341
Query 181 TTCAGGTTGAAGGAAAGACTGTTAAAGCCCAGATCTGGGACACTGCAGGGCAAGAGCGGT 240
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 342 TTCAGGTTGAAGGAAAGACTGTTAAGGCCCAGATATGGGACACTGCAGGTCAAGAGCGGT 401
Query 241 ACAGAGCTATCACAAGCGCTTACTACAGAGGCGCGGTAGGTGCGCTTCTTGTCTATGACA 300
|||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 402 ACAGAGCTATCACAAGTGCTTATTACAGAGGAGCGGTAGGTGCACTTCTTGTCTATGACA 461
Query 301 TTACCAAAAGACAAACCTTTGACAATGT-CTTAAGGTGGCTACGTGAACTAAGAGACCAT 359
| || ||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 462 TCACTAAAAGACAAACCTTTGACAATGTTCTGA-GGTGGCTACGTGAACTAAGAGACCAT 520
Query 360 GCAGATTCCAACATAGTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGA 419
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 GCGGATTCCAACATTGTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGA 580
Query 420 TCAGTTGCTGAGGAAGATGGACAGACTCTAGCTGAGACAGAAGGTCTCTCTTTCTTGGAG 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 TCAGTTGCGGAGGAAGATGGACAGACTCTAGCTGAGACAGAAGGTCTCTCTTTCTTGGAG 640
Query 480 ACATCTGCTCTTGAAGCCACCAATGTTGAAAAAGCATTTCAAACTGTGTTAGCAGAGATT 539
||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 641 ACATCAGCTCTTGAAGCCACCAATGTGGAGAAAGCATTTCAAACCGTGTTAGCAGAGATT 700
Query 540 TACCACATCATCAGCAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCCGCG 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 701 TACCACATCATCAGCAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCTGCC 760
Query 600 ATTCCGGGGCAAGGAACAACGATTAACGTTGGTGACACATCTGGAGCTGGCAAAAGAGGT 659
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 761 ATTCCGGGGCAAGGAACAACGATTAACGTTGAAGACACATCTGGAGCTGGCAAAAGAGGT 820
Query 660 TGCTGCTCTACTTAATTGAAAGTTTAAACTTTC 692
|||||||||||||||||||||||||||||||||
Sbjct 821 TGCTGCTCTACTTAATTGAAAGTTTAAACTTTC 853
> AT3G46830.1 | Symbols: ATRAB11A, ATRABA2C, ATRAB-A2C, RAB-A2C,
RABA2c | RAB GTPase homolog A2C | chr3:17246344-17248713 REVERSE
LENGTH=1238
Length=1238
Score = 739 bits (400), Expect = 0.0
Identities = 579/666 (87%), Gaps = 9/666 (1%)
Strand=Plus/Plus
Query 14 AGGA-AAAATGGCGCATAGGGTTGAACAGGATTATGATTATTTATTTAAGATCGTGTTGA 72
|||| |||||| ||||||| || || ||||| ||||||||||| |||||||| |||||||
Sbjct 222 AGGAGAAAATGACGCATAGAGTAGATCAGGAATATGATTATTTGTTTAAGATTGTGTTGA 281
Query 73 TTGGTGATTCTGGTGTTGGGAAATCAAACATCTTGTCTAGATTCACAAGGAATGAGTTTT 132
||||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||
Sbjct 282 TTGGTGATTCTGGTGTTGGGAAATCGAATATCTTGTCGAGATTCACCAGGAATGAGTTTT 341
Query 133 GTTTGGAATCTAAGTCCACTATTGGTGTTGAATTCGCCACCAGAACT-CTTCAGGTTGAA 191
| ||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 342 GCTTGGAATCTAAATCCACTATTGGTGTTGAATTCGCCACCAGAACTACT-CAGGTTGAA 400
Query 192 GGAAAGACTGTTAAAGCCCAGATCTGGGACACTGCAGGGCAAGAGCGGTACAGAGCTATC 251
|||||||| |||| ||||||||||||||||||||||| || ||| ||||||| || |||
Sbjct 401 GGAAAGACCATTAAGGCCCAGATCTGGGACACTGCAGGTCAGGAGAGGTACAGGGCGATC 460
Query 252 ACAAGCGCTTACTACAGAGGCGCGGTAGGTGCGCTTCTTGTCTATGACATTACCAAAAGA 311
|||||||| || ||||||||||| || ||||| ||||||||||| |||||||| || |||
Sbjct 461 ACAAGCGCGTATTACAGAGGCGCAGTGGGTGCACTTCTTGTCTACGACATTACTAAGAGA 520
Query 312 CAAACCTTTGACAATGTCTTAAGGTGGCTACGTGAACTAAGAGACCATGCAGATTCCAAC 371
|| |||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||
Sbjct 521 CAGACCTTTGACAATGTTTTAAGGTGGCTGCGCGAACTGAGAGACCATGCAGATTCCAAC 580
Query 372 ATAGTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGATCAGTTGCTGAG 431
|| |||||||||||||||||||||||| | ||||| |||||||||||||| |||||||||
Sbjct 581 ATTGTGATCATGATGGCTGGGAACAAATCCGATCTGAACCACTTGAGATCCGTTGCTGAG 640
Query 432 GAAGATGGACAGACTCTAGCTGAGACAG-AAGGTCTCTCTTTCTTGGAGACATCTGCTCT 490
|||||||| || | | | ||||||| || |||||||||||||| ||||||||||||||||
Sbjct 641 GAAGATGGTCAAAGTTTGGCTGAGA-AGGAAGGTCTCTCTTTCCTGGAGACATCTGCTCT 699
Query 491 TGAAGCCACCAATGTTGAAAAAGCATTTCAAACTGTGTTAGCAGAGATTTACCACATCAT 550
|||||| || || || || ||||| ||||| || | |||| ||||| ||||| |||||
Sbjct 700 TGAAGCAACAAACGTCGAGAAAGCGTTTCAGACCATCTTAGGTGAGATCTACCATATCAT 759
Query 551 CAGCAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCCGCGATTCCGGGGCA 610
|||||||| || ||||||| ||||||||||| || |||||||| || || || |||||
Sbjct 760 AAGCAAAAAGGCACTGGCTGCACAAGAAGCAGCAGCAGCTAATTCTGCAATCCCTGGGCA 819
Query 611 AGGAACAACGATTAACGTTGGTGACACATCTGGAG-CTGGCAAAA-GAGGTTGCTGCTCT 668
|||||| ||||||||||| | |||||||||||||| | | | ||| ||| || ||||||
Sbjct 820 AGGAACTACGATTAACGTCGATGACACATCTGGAGGC-G-CGAAACGAGCATGTTGCTCT 877
Query 669 ACTTAA 674
|||||
Sbjct 878 TCTTAA 883
> AT1G47595.1 | Symbols: | pseudogene, similar to Ras-related
protein Rab11C., blastp match of 77% identity and 2.3e-33 P-value
to SP|Q40193|R11C_LOTJA Ras-related protein Rab11C. {Lotus
japonicus} | chr1:17489055-17489450 REVERSE LENGTH=396
Length=396
Score = 418 bits (226), Expect = 4e-116
Identities = 272/295 (92%), Gaps = 0/295 (0%)
Strand=Plus/Plus
Query 274 CGGTAGGTGCGCTTCTTGTCTATGACATTACCAAAAGACAAACCTTTGACAATGTCTTAA 333
|||| || || ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2 CGGTGGGAGCACTTCTTGTCTATGACATCACCAAAAGACAGACCTTTGACAATGTCTTAA 61
Query 334 GGTGGCTACGTGAACTAAGAGACCATGCAGATTCCAACATAGTGATCATGATGGCTGGGA 393
|||||||||||||||||||||||||| | ||||||||||| ||||||||||| || |||
Sbjct 62 GGTGGCTACGTGAACTAAGAGACCATACGGATTCCAACATTGTGATCATGATAACTAGGA 121
Query 394 ACAAAGCTGATCTAAACCACTTGAGATCAGTTGCTGAGGAAGATGGACAGACTCTAGCTG 453
|||||||| ||||||||||||||| |||||| |||||||||||||| || |||| |||||
Sbjct 122 ACAAAGCTAATCTAAACCACTTGAAATCAGTAGCTGAGGAAGATGGTCACACTCCAGCTG 181
Query 454 AGACAGAAGGTCTCTCTTTCTTGGAGACATCTGCTCTTGAAGCCACCAATGTTGAAAAAG 513
||||||||||||||||| ||||||| || ||||||||||||||||| ||||| || ||||
Sbjct 182 AGACAGAAGGTCTCTCTATCTTGGAAACTTCTGCTCTTGAAGCCACAAATGTCGAGAAAG 241
Query 514 CATTTCAAACTGTGTTAGCAGAGATTTACCACATCATCAGCAAAAAAGCTTTGGC 568
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CATTTCAAACTGTGTTAGCAGAGATTTACCACATCATCAGCAAAAAAGCTTTGGC 296
> AT2G04120.1 | Symbols: | pseudogene, RAS-related GTP binding
protein, blastp match of 80% identity and 5.7e-32 P-value
to SP|Q39434|RAB2_BETVU Ras-related protein Rab2BV. (Sugar beet)
{Beta vulgaris} | chr2:1388194-1388947 FORWARD LENGTH=754
Length=754
Score = 377 bits (204), Expect = 6e-104
Identities = 238/255 (93%), Gaps = 0/255 (0%)
Strand=Plus/Plus
Query 285 CTTCTTGTCTATGACATTACCAAAAGACAAACCTTTGACAATGTCTTAAGGTGGCTACGT 344
||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||
Sbjct 318 CTTCTTGTCTATGACATCACCAAAAGACAGACTTTTGATAATGTCTTAAGGTGGCTACGT 377
Query 345 GAACTAAGAGACCATGCAGATTCCAACATAGTGATCATGATGGCTGGGAACAAAGCTGAT 404
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 378 GAACTAAGAGACCATGCGGATTCCAACATTGTGATCATGATGGCTGGGAACAAAGCTGAT 437
Query 405 CTAAACCACTTGAGATCAGTTGCTGAGGAAGATGGACAGACTCTAGCTGAGACAGAAGGT 464
|||||||||||||||||||| |||||||||||||| |||| ||||||| |||||||| ||
Sbjct 438 CTAAACCACTTGAGATCAGTAGCTGAGGAAGATGGTCAGATTCTAGCTAAGACAGAAAGT 497
Query 465 CTCTCTTTCTTGGAGACATCTGCTCTTGAAGCCACCAATGTTGAAAAAGCATTTCAAACT 524
|||||||||||||| |||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 498 CTCTCTTTCTTGGAAACATCTGCTCTTGAAGCCACCAATGTCGAGAAAGCATTTTAAACT 557
Query 525 GTGTTAGCAGAGATT 539
|| |||||| |||||
Sbjct 558 GTTTTAGCAAAGATT 572
> AT4G08190.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:5174523-5175476
REVERSE LENGTH=384
Length=384
Score = 244 bits (132), Expect = 6e-64
Identities = 169/185 (91%), Gaps = 9/185 (5%)
Strand=Plus/Plus
Query 334 GGTGGCTACGTGAACTAAGAGACCATGCAGATTCCAACATAGTGATCATGATGGCTGGGA 393
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 206 GGTGGCTACGTGAACTAAGAGACCATGCAGATTCCAACATTGTGATCATGATGGCTGGGA 265
Query 394 ACAAAGCTGATCTAAACCACTTGAGATCAGTTGCTGAGGAAGATGGACAGACTCTAGCTG 453
||||||||||||||||||||||||||||||| |||||||||||||| || | |
Sbjct 266 ACAAAGCTGATCTAAACCACTTGAGATCAGTAGCTGAGGAAGATGGTCA---T--A---- 316
Query 454 AGACAGAAGGTCTCTCTTTCTTGGAGACATCTGCTCTTGAAGCCACCAATGTTGAAAAAG 513
|||||||| |||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 317 AGACAGAAAGTCTCTCTTTCTTGGAAACATCTGCTCTTGAAGCCACCAATGTCGAGAAAG 376
Query 514 CATTT 518
|||||
Sbjct 377 CATTT 381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33606644343
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5