BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950652

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G59140.1 | Symbols:  | BTB/POZ domain-containing protein | c...   529    7e-150


> AT5G59140.1 | Symbols:  | BTB/POZ domain-containing protein | 
chr5:23874411-23875695 REVERSE LENGTH=640
Length=640

 Score =  529 bits (286),  Expect = 7e-150
 Identities = 314/327 (96%), Gaps = 3/327 (1%)
 Strand=Plus/Plus

Query  8    GACGACGACGAAGATGAGAGAGACGGTGAAGTTAATAAGCATGGAAGGATTCGAGTTCGT  67
            ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct  52   GACGACGACGAAGATGAGAGAGACGGTGAAGTTGATAAGCATGGAAGGTTTCGAGTTCGT  111

Query  68   CATCGACAGAGAAGCCGCTATGGTTTCTCAGACTATCCGAAGCATGCTCACTTCTCCAGG  127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  112  CATCGACAGAGAAGCCGCTATGGTTTCTCAGACTATCCGAAGCATGCTCACTTCTCCAGG  171

Query  128  TGGTTTCTCGGAATCGAAAGATGGCGTAGTGACTTTCCCTGATATCAGCACCACAATACT  187
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  172  TGGTTTCTCGGAATCGAAAGATGGCGTAGTGACTTTCCCTGATATAAGCACCACAATACT  231

Query  188  AGAGAAGATCTGCCAGTACTTCTACTGGTCTCTTCAGTACTCCAGAGGCAAAGAGACTGA  247
            ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct  232  AGAGAAGATTTGCCAGTACTTCTACTGGTCTCTTCAATACTCCAGAGGCAAAGAGACAGA  291

Query  248  GTTTCACATTGAGCCTGAACTGACTCTAGAGCTGATGATGGCTGCTAACTACCTTCACAC  307
            |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  292  GTTTCATATTGAGCCTGAACTGACTCTAGAGCTGATGATGGCTGCTAACTATCTTCACAC  351

Query  308  TTGAACCA--AAA-GGATAACGCTGTT  331
            |||||  |  ||| |||||||||||||
Sbjct  352  TTGAAGAATGAAAAGGATAACGCTGTT  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15432198943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5