BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950660
Length=383
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59090.1 | Symbols: ATSBT4.12, SBT4.12 | subtilase 4.12 | ch... 399 7e-111
AT5G58830.1 | Symbols: | Subtilisin-like serine endopeptidase ... 261 3e-69
AT5G58820.1 | Symbols: | Subtilisin-like serine endopeptidase ... 150 8e-36
AT5G58840.1 | Symbols: | Subtilase family protein | chr5:23759... 134 8e-31
> AT5G59090.1 | Symbols: ATSBT4.12, SBT4.12 | subtilase 4.12 |
chr5:23851905-23855275 REVERSE LENGTH=2471
Length=2471
Score = 399 bits (216), Expect = 7e-111
Identities = 329/378 (87%), Gaps = 30/378 (8%)
Strand=Plus/Plus
Query 1 TTACTACATTTTACaaaa-aaaTGACGAATCTAGCAGCGTCTACTTGCCTCCACTCATGT 59
|||||||||||||||||| ||||| |||||||||| ||||| |||||||| |||||||
Sbjct 20 TTACTACATTTTACAAAACAAATGGCGAATCTAGCTGCGTCCACTTGCCTATACTCATGG 79
Query 60 CTCCTTGTTTTGTTCTTGAGTTCAGTCTCAGCAGTCATATATGAAGATCA-ACAGGTGTA 118
|||||||||||||| |||||||||||||||||| ||||| |||||||| | |||||||||
Sbjct 80 CTCCTTGTTTTGTTATTGAGTTCAGTCTCAGCAATCATAGATGAAGAT-ACACAGGTGTA 138
Query 119 TATAGTCTACATGGGTTCACTTTCGTCTCGCGCAGACTACATACCAACGTCCGATCACAT 178
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 139 TATAGTCTACATGGGTTCACTTTCGTCTCGCGCGGACTACATACCAACGTCCGATCACAT 198
Query 179 GAGTATTCTTCAACAGGTCACAGGAGAAAGTT--A-C-AAGA--G---G---AGT--TT- 223
|||||||||||||||||||||||||||||||| | | ||| | | || ||
Sbjct 199 GAGTATTCTTCAACAGGTCACAGGAGAAAGTTCGATCGAAGGTCGCTTGGTGAGAAGTTA 258
Query 224 CAAC-GG--TTTC---G-C-----AGCCAGGCTCACTGAGTCAGAACGTACACTAATTGC 271
||| || |||| | | |||||||||||||||||||||||||||| |||||||
Sbjct 259 CAAGAGGAGTTTCAACGGCTTCGCAGCCAGGCTCACTGAGTCAGAACGTACATTAATTGC 318
Query 272 CGAAATGGAGGGAGTTGTGTCTGTGTTCCCAAACAAAATGTTACAACTCCAAACGACGAC 331
|||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 319 CGAAATAGAGGGAGTTGTGTCTGTGTTCCCAAACAAGATATTACAACTCCATACGACGAC 378
Query 332 GTCATGGGACTTCATGGG 349
||| ||||||||||||||
Sbjct 379 GTCTTGGGACTTCATGGG 396
> AT5G58830.1 | Symbols: | Subtilisin-like serine endopeptidase
family protein | chr5:23755775-23758684 FORWARD LENGTH=2202
Length=2202
Score = 261 bits (141), Expect = 3e-69
Identities = 261/317 (82%), Gaps = 16/317 (5%)
Strand=Plus/Plus
Query 44 TTGCCTCCACTCATGTCTCCTTGTTTTGTTCTTGAGTTCAGTCTCAGCAGTCATATATG- 102
||| |||| |||||||||| || | ||||| |||||||||||||||||| | |||||||
Sbjct 33 TTGTCTCCTCTCATGTCTCATTATATTGTTTTTGAGTTCAGTCTCAGCAATTATATATGA 92
Query 103 -----AAGATCAACAGGTGTATATAGTCTACATGGGTTCACTTTCGTCTC-GCGCAGACT 156
||||| |||| |||||| | ||||| ||||| |||||| |||||| | || |||
Sbjct 93 TCCTCAAGATAAACAAGTGTATGTTGTCTATATGGGCTCACTTCCGTCTCAAC-CAAACT 151
Query 157 ACATACCAACGTCCG-ATCACATGAGTATTCTTCAACAGGTCACAGGAGAAAGTTACAAG 215
||| ||||| || || ||||||| | |||||||||| ||||||| |||||||||||||||
Sbjct 152 ACACACCAATGT-CGAATCACATAAATATTCTTCAAGAGGTCACCGGAGAAAGTTACAAG 210
Query 216 AGGAGTTTCAACGGTTTCGCAGCCAGGCTCACTGAGTCAGAACGTACACTAATT-GCCGA 274
|||||||||||||||||| | ||| ||||||||||||||||| | | | | |||||
Sbjct 211 AGGAGTTTCAACGGTTTCTCGGCCCTACTCACTGAGTCAGAACG-AGAGGGAGTAGCCGA 269
Query 275 AATGGAGGGAGTTGTGTCTGTGTTCCCAAACAA-AATGTTACAA-CTCCAAACGACGACG 332
|||||||||||||||||||||||||| | || || | |||| |||||||||||| ||
Sbjct 270 AATGGAGGGAGTTGTGTCTGTGTTCCGGAGTAAGAAC-T-ACAAACTCCAAACGACGGCG 327
Query 333 TCATGGGACTTCATGGG 349
|| ||||||||||||||
Sbjct 328 TCTTGGGACTTCATGGG 344
> AT5G58820.1 | Symbols: | Subtilisin-like serine endopeptidase
family protein | chr5:23751956-23754773 FORWARD LENGTH=2112
Length=2112
Score = 150 bits (81), Expect = 8e-36
Identities = 128/150 (85%), Gaps = 5/150 (3%)
Strand=Plus/Plus
Query 202 GAGAAAGTTACAAGAGGAGTTTCAACGGTTTCGCAGCCAGGCTCACTGAGTCAGAACGTA 261
||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||| |
Sbjct 201 GAG-AAGTTACAAGAGGAGTTTCAACGGTTTCGCGGCCCGACTCACTGAGTCAGAACGAA 259
Query 262 CACTAATTGCCGAAATGGAGGGAGTTGTGTCTGTGTTCCCAAACAA-AATGTTACAA-CT 319
| | | ||||||||||||||||||||||||||||| || |||| || | |||| ||
Sbjct 260 TAAGAGTAGCCGAAATGGAGGGAGTTGTGTCTGTGTTTCCGAACATTAAC-T-ACAAACT 317
Query 320 CCAAACGACGACGTCATGGGACTTCATGGG 349
|||||||||| |||| ||||| ||| ||||
Sbjct 318 CCAAACGACGGCGTCTTGGGATTTCTTGGG 347
> AT5G58840.1 | Symbols: | Subtilase family protein | chr5:23759003-23762059
FORWARD LENGTH=2294
Length=2294
Score = 134 bits (72), Expect = 8e-31
Identities = 127/152 (84%), Gaps = 9/152 (6%)
Strand=Plus/Plus
Query 202 GAGAAAGTTACAAGAGGAGTTTCAACGGTTTCGCAGCCAGGCTCACTGAGTCAGAACGTA 261
||| ||||||||||||||||||||||||||| || ||| | ||||||||||||||||| |
Sbjct 259 GAG-AAGTTACAAGAGGAGTTTCAACGGTTTTGCGGCCCGACTCACTGAGTCAGAACG-A 316
Query 262 CACTA-ATT-GCCGAAATGGAGGGAGTTGTGTCTGTGTTCCCAAACAA-AATGTTACAA- 317
| | | | ||||||||||||||||||||||||||||| || ||| || | ||||
Sbjct 317 GAA-AGAGTAGCCGAAATGGAGGGAGTTGTGTCTGTGTTTCCGGACATTAAC-T-ACAAA 373
Query 318 CTCCAAACGACGACGTCATGGGACTTCATGGG 349
|||||||||||| |||| ||||| ||| ||||
Sbjct 374 CTCCAAACGACGGCGTCTTGGGATTTCTTGGG 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18046121891
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5