BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950662
Length=1570
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59070.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 2431 0.0
> AT5G59070.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr5:23845198-23847393 FORWARD LENGTH=1621
Length=1621
Score = 2431 bits (1316), Expect = 0.0
Identities = 1487/1571 (95%), Gaps = 5/1571 (0%)
Strand=Plus/Plus
Query 1 GATTCGATCTATCACTTTCCATGGCTAGAGAAAACCAATTGATGAGCTTCTCATTCAGTT 60
||||||||||||||||| |||||||||||||||||| ||||||||||||||| || ||||
Sbjct 20 GATTCGATCTATCACTTCCCATGGCTAGAGAAAACCCATTGATGAGCTTCTCCTTTAGTT 79
Query 61 TCAGATAtctctgtcactttgctctactcctctctctcctctcattcgtctcttttctct 120
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 80 TCAGATATCTCTGTCACTTTGCTCTACTCCTCTCTCTCCTCTCCTTTGTCTCTTTTCTCT 139
Query 121 TCAGACACAACACATCACTCTGTTCTTGCCTTTACGATCACAACCCCAAAGCTAACACAT 180
|||||||||||||||||||||||||||| ||||||||||||||| || | | ||||||||
Sbjct 140 TCAGACACAACACATCACTCTGTTCTTGTCTTTACGATCACAACACCTACGTTAACACAT 199
Query 181 TCGATCACTACCACCATAACAATGAAACCATTGATCTTCTTAGATTTTCTTCTGCTTGGA 240
||||||| | || || |||||||||||||| ||||||||| |||| |||||||||||||
Sbjct 200 TCGATCA-T--CAGCAAAACAATGAAACCATCGATCTTCTTCGATTCTCTTCTGCTTGGA 256
Query 241 ACCATCTCACTTTCCCTTCTAAACCCAAGAAGACTCTCAAGATCGCTGTGGTGGTCAAGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 ACCATCTCACTTTCCCTTCTAAACCCAAGAAGACTCTCAAGATCGCTGTGGTGGTCAAGA 316
Query 301 AATGGCCGAGGAAATCGCAAGCTGGTGGGCTCGAGCGACACGCGCTTACTTTGCACCTTG 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 317 AATGGCCGAGGAAATCGCAAGCTGGTGGGCTCGAGCGACACGCGCTTACATTGCATCTCG 376
Query 361 CTCTAGCTAATCGCGGCCATGAGGTTCATGTTTTCACAGCTGCTTCTCCGTCGTTCCCTG 420
||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| ||||||||||
Sbjct 377 CTCTAGCCAATCGTGGCCACGAGCTTCATGTTTTCACCGCTGCTTCTCCATCGTTCCCTG 436
Query 421 AGTATCAGCTGAAAAATCT-ACTGTTCCATCTCTCCGAGCCAACCGCTGCTGAATATCTC 479
| ||||| ||||||||||| | ||||||||||||| |||||||||||||||| ||||||
Sbjct 437 AATATCAACTGAAAAATCTGA-TGTTCCATCTCTCTGAGCCAACCGCTGCTGGATATCTT 495
Query 480 GATCAAGCTTCTGTCTCGCTACAGCTTCAGACGCAGAACGCAAGTGGAAGACCATTTGAC 539
||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 496 GATCAAGCTTCTGTCTCGCAACAGCTTCAGACGCAGAACGCTAGTGGAAGACCGTTTGAC 555
Query 540 GTGATTCACACAGAGAGCGTCGGACTTCTCCACACAAGAGCTAAGAACCTCCGTAACGTG 599
|| ||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||
Sbjct 556 GTAATTCACACAGAGAGCGTTGGGCTTCTCCACACAAGAGCCAAGAATCTCCGTAACGTG 615
Query 600 GTCGCGTCTTGGCATGGAATCGCTTACGAAACTTTTCACTCCGACATCATCCAAGAACTC 659
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 616 GTCGCGTCTTGGCATGGAATCGCTTACGAAACTTTTCACTCTGACATCATCCAAGAACTC 675
Query 660 CTCCGTCAAGCAGACATCGCCGCCACCACCGCAGCTGGAACCGAAGAAGAACAGTCACCG 719
|| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||
Sbjct 676 CTTCGTCAAGCAGACATCGCCGCCGCCACCGCTGCTGGAACCGAAGAAGAACAGCCACCG 735
Query 720 CCTTCATCTCCAGCTCTGACGGAGCGAGCGAAGAGAGTCGTCGAGGAAGTCAAATTCTTC 779
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 736 CCTTCATCGCCAGCTCTGACGGAGCGAGCGAAGCGAGTCGTCGAGGAAGTCAAATTCTTC 795
Query 780 CAACGCTACGCTCACCACGTGGCAACTAGCGATCATTGTGGTGACGTACTCAAGAGGATT 839
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 796 CAACGTTACGCTCACCACGTGGCAACTAGCGATCACTGCGGTGACGTACTCAAGAGGATT 855
Query 840 TACATGATTCCGGAGGAACGTGTCCACATCATTCTAAACGGCGTCGACGAGAACGTTTTC 899
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 856 TACATGATTCCGGAGGAACGTGTCCATATCATTCTAAACGGCGTCGACGAGAACGTTTTC 915
Query 900 AAACCGGACGTTTCAAAACGTGAGAGCTTCAGAGAGAAATATGGCGTTAGAAGCGGCAAG 959
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 916 AAACCGGACGTTTCAAAACGTGAGAGCTTTAGAGAGAAATTTGGCGTTAGAAGCGGCAAG 975
Query 960 AACAAGAAACCTCCTCTGGTTTTGGGAATTGCAGGGAGGTTAGTGAGAGATAAAGGTCAT 1019
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 AACAAGAAATCTCCTCTGGTTTTGGGAATTGCAGGGAGGTTAGTGAGAGATAAAGGTCAT 1035
Query 1020 CCTTTGATGTTCGCAGCTTTGAAACGAGTGTTTGAAGAAAGCAAGGAGGCACGTGAAAAC 1079
|||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1036 CCTTTGATGTTCTCAGCTTTGAAGCGAGTGTTTGAAGAAAACAAGGAGGCACGTGAAAAC 1095
Query 1080 GTTGTCGTTTTAGTAGCTGGAGATGGTCCATGGGGAAACAGATATAGAGACCTCGGGTCT 1139
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1096 GTTGTCGTTTTGGTAGCTGGAGATGGTCCATGGGGAAACAGATATAAAGACCTCGGGTCT 1155
Query 1140 AATAATGTAATTGTTCTTGGACCATTGGATCAAGAAAGGCTAGCGGAATTCTACAACGCG 1199
| |||||| |||||||||||||| ||||||||||||| |||||||| |||||||||||||
Sbjct 1156 ACTAATGTGATTGTTCTTGGACCGTTGGATCAAGAAAAGCTAGCGGGATTCTACAACGCG 1215
Query 1200 ATCGATGTGTTTGTGAATCCGACTCTTCGAGCTCAAGGGCTCGATCACACTCTTTTGGAA 1259
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 1216 ATCGATGTGTTTGTGAATCCGACCCTTCGAGCTCAAGGGCTGGATCACACTCTCTTGGAA 1275
Query 1260 GCCATGGTTTCAGGCAAACCGGTCTTAGCTACTAGGCTAGCGAGTATCACTGGGTCAGTA 1319
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 GCCATGGTTTCAGGAAAACCGGTCTTAGCTACTAGGCTAGCGAGTATCACTGGGTCAGTG 1335
Query 1320 GTTGTCGGTCCACATTTGGGATATACTTTCTCACCAAATGTTGAGTCTCTTAGCGAGGCG 1379
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1336 GTTGTCGGTCCACATTTGGGATATACTTTCTCACCAAATGTTGAGTCTCTTACCGAGGCG 1395
Query 1380 ATTTCACGGGTTGTTAGCGATGGAACTGAGGAATTGCAAAGGAAAGGCAAGGAAGCGCGT 1439
|||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1396 ATTTTGCGGGTTGTTAGCGATGGAACAGAGGAATTACAGAGGAAAGGCAAGGAAGCGCGT 1455
Query 1440 GAACGGTCATTGAGGCTTTTCACGGCGACTAAAATGGCTGATTCATATGAAAGGTTTTTT 1499
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 GAACGGTCGTTGAGGCTTTTCACGGCGACTAAAATGGCTGATTCATATGAAAGGTTTTTT 1515
Query 1500 CTTTGCATTTCGGATCAGAGCTTTTGTACGTTACAAGCTTCAAACATATGAGCGATAACG 1559
|||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||
Sbjct 1516 CTTTGCATTTCGGATCAGAGGTTTTGTACGTTACAAGCTTAAAACATTTGAGCTATAACA 1575
Query 1560 CTAATATAGTT 1570
|||||||||||
Sbjct 1576 CTAATATAGTT 1586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77509641480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5