BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950668

Length=890
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G35890.1 | Symbols:  | NAC (No Apical Meristem) domain trans...   119    5e-26


> AT1G35890.1 | Symbols:  | NAC (No Apical Meristem) domain transcriptional 
regulator superfamily protein | chr1:13341300-13341953 
FORWARD LENGTH=516
Length=516

 Score =  119 bits (64),  Expect = 5e-26
 Identities = 120/144 (83%), Gaps = 15/144 (10%)
 Strand=Plus/Plus

Query  392  GGACGATGATAAGTTTCAGGAGCTAGTCCTCTGCAAGATTCACAAG-A-AA-AAG---AA  445
            ||| || ||||||||| ||||  ||||| |||| |||||||| ||| | || |||   ||
Sbjct  200  GGAAGAAGATAAGTTTGAGGA--TAGTCGTCTGGAAGATTCAGAAGTATAAGAAGTCCAA  257

Query  446  GAAGGACAAGAAGGATCATCAGCATG-AGTCTCCTTCTTCTTCCTC-AGAGCAGCAGCCG  503
            |||||||||||||||||||||||||| ||    | ||||||||||| | ||| |||||||
Sbjct  258  GAAGGACAAGAAGGATCATCAGCATGAAG----CATCTTCTTCCTCTA-AGCCGCAGCCG  312

Query  504  ATCAAGAAAAGGAAGTCCAAGAAG  527
            |||||||||| |||||||||||||
Sbjct  313  ATCAAGAAAAAGAAGTCCAAGAAG  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43452537155


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5