BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950670
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59280.1 | Symbols: APUM16, PUM16 | pumilio 16 | chr5:239141... 1053 0.0
AT1G35850.1 | Symbols: APUM17, PUM17 | pumilio 17 | chr1:133305... 806 0.0
AT1G21620.1 | Symbols: APUM20, PUM20 | pumilio 20 | chr1:757912... 248 7e-65
> AT5G59280.1 | Symbols: APUM16, PUM16 | pumilio 16 | chr5:23914141-23915139
REVERSE LENGTH=999
Length=999
Score = 1053 bits (570), Expect = 0.0
Identities = 783/884 (89%), Gaps = 21/884 (2%)
Strand=Plus/Plus
Query 120 CGGCGATGGAT-TTGCGATGGATGTTCAACTTTATGACTAGAAGCGAAGATGTGCCTCGT 178
||| ||||||| || | | |||| |||||||| |||||| |||| |||||| | | |
Sbjct 131 CGGAGATGGATATT-CAAAGGATTTTCAACTTCATGACTGGAAGTGAAGAT-T---T-G- 183
Query 179 TTCAAAGAATTGATCTCAGTGTTAGACACGAGAACGCTTATGTGGATGGCGTCTTCT-TT 237
||||| |||||||| ||||||||| |||||||||||||||||||||||| | |
Sbjct 184 ---AAAGACGACATCTCAGTATTAGACACGGGAACGCTTATGTGGATGGCGTCTT-TAAT 239
Query 238 GACGTCTGACTCCAATTACTTCATGGTCATCGCAAGAAACCAGTACGGCTCCAAAAGCAT 297
||||||||||| | ||||||||||||||||| ||| |||| || |||||||||||| | |
Sbjct 240 GACGTCTGACTGCGATTACTTCATGGTCATCACAACAAACAAGAACGGCTCCAAAACCCT 299
Query 298 ACAGAGACTCATGGGGATGTCAGATGACGTGGACGTCTTCTTCTTCGAGGCTATCATGCG 357
||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 300 ACAGAAACTCATGGGAATGTCAGATGACATGGACGTCTTCTTCTTTGAGGCTATCATGCG 359
Query 358 ACTCTTCCTCTATGTCATGACCGACAAGTACGCGTCCTACGTGGCAATAAAGGGAATGAG 417
|||||| || |||||||||| ||||||||||| ||||||||| | ||| |||| |||||
Sbjct 360 CCTCTTCATCCATGTCATGACTGACAAGTACGCCTCCTACGTGACGATACAGGGGATGAG 419
Query 418 AGTTTTTCAACAGGACAAGAGAGAGTTGATGTATGAGCACATTCTCCAAAACGCGCT-TT 476
|||||||||||||||||||||||||||||||||||| || ||||| | | ||||| | ||
Sbjct 420 AGTTTTTCAACAGGACAAGAGAGAGTTGATGTATGATCAAATTCTTCGATACGCG-TGTT 478
Query 477 ACCTGGCGCGTGACCAACACGGTTGCATCGCCCTCAACGAAATCATAACCGACTTGGACG 536
||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 TCCTGGCGGGTGACCAGTACGGTTGCATCGCGCTCAACGAAATCATAACCGACTTGGACG 538
Query 537 ATCCTTACTACAGAAACCAGCTCCTGGACATAGTCGCGAACAACGCTCTTTTGCTAAGCA 596
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 ATCCTTACTACAGAGACCAGCTCCTTGACATAGTCGCGAACAACGCTCTTTTGCTAAGCA 598
Query 597 ACGATGCTTATGGGAACTTTGTGGTCCAACACGTGCTTAAACTACGTGACTTCCGCTGCA 656
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 599 ACGATGCTTATGGCAACTTTGTGGTCCAACACGTGCTTAAACTACGTGACTCCCGTTGCA 658
Query 657 CGCGTAACATCGCTGATAATCTATGTGGCCACTGCGTCGAACTCTCGTTTAAAAAGTATG 716
|||||||||| |||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct 659 CGCGTAACATTGCTGATAAACTATGTGGCTACTGCGTCGAGCTCTCGTTTAAAAAGTATG 718
Query 717 GAAGCTACATTGTGGAGCGGCTTTTGGAGGTGGGGGAC-TCAGTAATGG-AACTAGTGGT 774
|||||||||| ||||||||||||||||||| ||||||| | | ||||| ||| ||||||
Sbjct 719 GAAGCTACATCGTGGAGCGGCTTTTGGAGGCGGGGGACGT-ACCAATGGCAAC-AGTGGT 776
Query 775 TATGGATCTTTTGGCGTGCAAGAGAGAGATGTTGATGAGGTTGGCGAGGAGTGAGTACGG 834
| ||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||||||
Sbjct 777 TCTGGATCTGTTGGCGTGCAAGACAGAGATGTTGATAAGGTTGGCGAGGAGCGAGTACGG 836
Query 835 GAATTTCGTGGTGTACAACGCACTGGATTTAACGAAGGACATTCTTACGGCTGATCTGTT 894
|||||| ||||||| ||| |||||||| ||||| || || || || ||||||||||||||
Sbjct 837 GAATTTTGTGGTGTGCAAGGCACTGGAATTAACAAATGAGATCCTCACGGCTGATCTGTT 896
Query 895 TTATGGTTTGGTGAGAAAG-CTCATGCCTTATCGCCATCTCTTGCGTAGGTCTCCTGGAA 953
||| |||||||||| | || ||||||||||||||||||||||||| |||||||||| |||
Sbjct 897 TTACGGTTTGGTGA-ATAGGCTCATGCCTTATCGCCATCTCTTGCATAGGTCTCCTCGAA 955
Query 954 GCAAGATTGCAGCCATCCTGGACTCAATGCCTGTCCCAAACTAG 997
||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 956 GCAAGATTGCAACCATCTTGGACTCAATGAGTGTCCCAAACTAG 999
> AT1G35850.1 | Symbols: APUM17, PUM17 | pumilio 17 | chr1:13330510-13331506
FORWARD LENGTH=915
Length=915
Score = 806 bits (436), Expect = 0.0
Identities = 611/697 (88%), Gaps = 6/697 (1%)
Strand=Plus/Plus
Query 304 ACTCATGGGGATGTCAGATGACGTGGACGTCTTCTTCTTCGAGGCTATCATGCGACTCTT 363
||||||| |||||||||||||| |||||||||||||||| | |||||||||||| |||||
Sbjct 222 ACTCATGAGGATGTCAGATGACATGGACGTCTTCTTCTTTGTGGCTATCATGCGCCTCTT 281
Query 364 CCTCTATGTCATGACCGACAAGTACGCGTCCTACGTGGCAATAAAGGGAATGAGAGTTTT 423
| || ||||||||| |||||| ||||| ||||||||||| ||| |||| |||||| ||||
Sbjct 282 CATCCATGTCATGATCGACAAATACGCCTCCTACGTGGCGATACAGGGGATGAGAATTTT 341
Query 424 TCAACAGGACAAGAGAGAGTTGATGTATGAGCACATTCTCCAAAACGCGCTTTACCTGGC 483
| |||||||||||||||||||||||||||| |||||||| | | ||||||||| ||||||
Sbjct 342 TAAACAGGACAAGAGAGAGTTGATGTATGATCACATTCTTCGATACGCGCTTTTCCTGGC 401
Query 484 GCGTGACCAACACGGTTGCATCGCCCTCAACGAAATCATAACCGACTTGGACGATCCTTA 543
||||||||| | |||||||| || |||||||||||||||| || ||||||||||||||
Sbjct 402 GCGTGACCAGTATGGTTGCATTGCGCTCAACGAAATCATAAAAGAGTTGGACGATCCTTA 461
Query 544 CTACAGAAACCAGCTCCTGGACATAGTCGCGAACAACGCTCTTTTGCTAAGCAACGATGC 603
||| ||| || ||||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 462 CTATAGAGACGAGCTCATGGACATAGTCTCAAACAACGCTCTTTTGCTAAGCAACGATGC 521
Query 604 TTATGGGAACTTTGTGGTCCAACACGTGCTTAAACTACGTGACTTCCGCTGCACGCGTAA 663
|||||| ||||||||||||||||||||||||||||||| ||||| ||| |||||| ||||
Sbjct 522 TTATGGCAACTTTGTGGTCCAACACGTGCTTAAACTACATGACTCCCGTTGCACGGGTAA 581
Query 664 CATCGCTGATAATCTATGTGGCCACTGCGTCGAACTCTCGTTTAAAAAGTATGGAAGCTA 723
||| |||||||| ||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 582 CATTGCTGATAAACTATGTGGCTACTGCGTTGAGCTCTCGTTTAAAAAGTATGGAAGCTA 641
Query 724 CATTGTGGAGCGGCTTTTGGAGGTGGGGGAC-TCAGTAATGG-AACTAGTGGTTATGGAT 781
||| |||||||| |||||||||||| ||||| | | ||||| ||| | || || |||||
Sbjct 642 CATCGTGGAGCGACTTTTGGAGGTGAGGGACAT-ACCAATGGCAACAATTG-TTCTGGAT 699
Query 782 CTTTTGGCGTGCAAGAGAGAGATGTTGATGAGGTTGGCGAGGAGTGAGTACGGGAATTTC 841
||||| |||||||||| |||||||||||| |||||||||||||| ||| ||||||||||
Sbjct 700 CTTTTAGCGTGCAAGACAGAGATGTTGATAAGGTTGGCGAGGAGCGAGAACGGGAATTTT 759
Query 842 GTGGTGTACAACGCACTGGATTTAACGAAGGACATTCTTACGGCTGATCTGTTTTATGGT 901
||||||| ||| |||||| ||||| || |||||||| || |||||||| ||||| ||
Sbjct 760 GTGGTGTGCAAATTACTGGAATTAACAAATGACATTCTCACTGCTGATCTATTTTACAGT 819
Query 902 TTGGTGAGA-AAGCTCATGCCTTATCGCCATCTCTTGCGTAGGTCTCCTGGAAGCAAGAT 960
||||||| | ||||||| |||||||||| |||||||| ||||| ||||| |||||||||
Sbjct 820 TTGGTGA-ATAAGCTCAGGCCTTATCGCTTTCTCTTGCATAGGTTTCCTGAAAGCAAGAT 878
Query 961 TGCAGCCATCCTGGACTCAATGCCTGTCCCAAACTAG 997
|| ||||||| ||| |||||||| |||||||||||||
Sbjct 879 TGTAGCCATCTTGGGCTCAATGCGTGTCCCAAACTAG 915
> AT1G21620.1 | Symbols: APUM20, PUM20 | pumilio 20 | chr1:7579129-7580171
FORWARD LENGTH=927
Length=927
Score = 248 bits (134), Expect = 7e-65
Identities = 323/410 (79%), Gaps = 29/410 (7%)
Strand=Plus/Plus
Query 575 AACAACGCTCTTTTGCTAAGCAACGATGCTTATGGGAACTTTGTGGTCCAACACGTGCTT 634
||| |||||||| | |||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 515 AAC-ACGCTCTTGTACTAAGCAACGATGCTTATGGGAACTTTGTGATACAACGCGTGCTT 573
Query 635 AAACT-ACGTGACTTCCGCT-GCACGCGTAACATCG-CTGATAATCTATGTGGCCACTGC 691
||||| | |||||| || | ||| | ||||||| | | || |||| |||||||||
Sbjct 574 AAACTGAA-TGACTTGCG-TAGCAAGAACAACATCGTC-GTTAGTCTACGTGGCCACTTT 630
Query 692 GTCGAACTCTCGTTTAA-AAAGTATGGAAGCTACATTGTGGA-GCGGCTTTTGGAGGTGG 749
|| || ||||||||| | ||| |||||||||||| ||||||| | ||||||||| |
Sbjct 631 GTTGATCTCTCGTTTCAGAAA-TATGGAAGCTACGTTGTGGATGTA-CTTTTGGAGACGA 688
Query 750 GGGACTCAGTAATGGAACTAGTGGTT-ATGGATCTTTTGGC--GTGCAAGAGAGAGATGT 806
||| ||| | ||| | ||||| | ||| ||| ||| ||| ||| |||| ||||
Sbjct 689 AGGAGTCA--A-TGGTTGTGGTGGTGGA-GGAGCTTATGGAATGTG-AAG-GAGATATGT 742
Query 807 TGATGAGGTTGGCGAGGAGTGAGTACGGGAATTTCGTGGTGTACAACGCACTG-GATTTA 865
|||||||||||||||||| |||||| ||||||||| |||||| ||| |||||| || | |
Sbjct 743 TGATGAGGTTGGCGAGGAATGAGTATGGGAATTTCTTGGTGTGCAAGGCACTGAGAGTCA 802
Query 866 A-C-GAAGGACATTCTTACGG-CTGATCTGTTTTATGGTTTGGTG-AGAAAGCTCATGCC 921
| |||||| || ||| || |||||||||||| ||||||||| | || ||||| |||
Sbjct 803 CGCAGAAGGAGATGGTTA-GGACTGATCTGTTTTGGGGTTTGGTGCATAA-GCTCAAGCC 860
Query 922 TTATCGCCATCTCTTGCGTAGGTCTCCTGGAA-GCAAGATTGCAGCCATC 970
|| || | ||||||||||| |||||| ||||| | || |||||| |||||
Sbjct 861 TTTTCACAATCTCTTGCGTTGGTCTCGTGGAAAG-AACATTGCATCCATC 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5