BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950672
Length=542
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59300.1 | Symbols: UBC7, ATUBC7 | ubiquitin carrier protein... 907 0.0
AT3G46460.1 | Symbols: UBC13 | ubiquitin-conjugating enzyme 13 ... 595 1e-169
> AT5G59300.1 | Symbols: UBC7, ATUBC7 | ubiquitin carrier protein
7 | chr5:23919597-23921304 REVERSE LENGTH=883
Length=883
Score = 907 bits (491), Expect = 0.0
Identities = 525/542 (97%), Gaps = 0/542 (0%)
Strand=Plus/Plus
Query 1 TTTCTCTATCATCATCATCCATGGCTTCGCAAGCTAGCCTTCTCCTTCAGAAACAACTTA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 92 TTTCTCTATCATCATCATCCATGGCTTCGCAAGCTAGCCTTCTCCTTCAGAAACAACTCA 151
Query 61 AAGATCTCTGTAAGCATCCTGTTGATGGATTCTCTGCTGGTCTCGTTGATGATAAGAATA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 152 AAGATCTCTGTAAGCATCCTGTTGATGGATTCTCTGCTGGTCTCGTTGATGAGAAGAATA 211
Query 121 TATTCGAATGGAGCGTTACCATTATCGGACCTCCTGATACTCTCTATGAAGGAGGATTCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 TATTCGAATGGAGCGTTACCATTATCGGACCTCCTGATACTCTCTATGAAGGAGGATTCT 271
Query 181 TTAACGCTATTATGACATTTCCGCAAAACTATCCGAATAGCCCGCCAACCGTGAGGTTTA 240
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 272 TTAACGCGATTATGACATTTCCGCAAAACTATCCGAATAGTCCGCCAACCGTGAGGTTTA 331
Query 241 CTTCGGATATGTGGCATCCTAACGTTTATTCTGATGGTCGTGTTTGCATATCTATTCTTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 CTTCGGATATGTGGCATCCTAACGTTTATTCTGATGGTCGTGTTTGCATATCTATTCTTC 391
Query 301 ATCCTCCCGGTGATGATCCTAGCGGTTATGAGCTTGCAAGCGAGCGCTGGACTCCTGTTC 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 392 ATCCTCCCGGTGATGATCCTAGCGGTTATGAGCTTGCAAGCGAGCGTTGGACTCCTGTTC 451
Query 361 ATACTGTTGAAAGTATTATGTTGAGTATCATATCGATGCTTTCTGGTCCCAATGATGAGT 420
|||| ||||| ||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 452 ATACAGTTGAGAGTATTATGTTGAGTATCATATCAATGCTTTCTGGTCCTAACGATGAGT 511
Query 421 CTCCAGCAAATGTTGAAGCTGCCAAAGAATGGCGAGAGAAGAGAGACGAGTTCAAGAAGA 480
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 512 CTCCAGCAAATGTTGAAGCTGCCAAAGAATGGCGAGATAAGAGAGATGAGTTCAAGAAGA 571
Query 481 AAGTGAGCCGCTGTGTCAGAAAGTCTCAAGAAATGTTGTGAACAACTTCCAACTTCACAC 540
|||||||||| |||||||||||||||||||||||||| ||| |||| || ||||||||||
Sbjct 572 AAGTGAGCCGTTGTGTCAGAAAGTCTCAAGAAATGTTTTGATCAACGTCAAACTTCACAC 631
Query 541 CT 542
||
Sbjct 632 CT 633
> AT3G46460.1 | Symbols: UBC13 | ubiquitin-conjugating enzyme 13
| chr3:17095878-17097452 REVERSE LENGTH=880
Length=880
Score = 595 bits (322), Expect = 1e-169
Identities = 439/497 (88%), Gaps = 2/497 (0%)
Strand=Plus/Plus
Query 30 CAAGCTAGCCTTCTCCTTCAGAAACAACTTAAAGATCTCTGTAAGCATCCTGTTGATGGA 89
|||||| | ||||| ||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 147 CAAGCTTGTCTTCTTCTTCAGAAACAGCTTAAAGATCTTTGTAAGCATCCTGTAGATGGA 206
Query 90 TTCTCTGCTGGTCTCGTTGATGATAAGAATATATTCGAATGGAGCGTTACCATTATCGGA 149
|||||||||||| | |||||||| ||||||||||||||||||||||| || ||||| |||
Sbjct 207 TTCTCTGCTGGTTTAGTTGATGAGAAGAATATATTCGAATGGAGCGTAACTATTATTGGA 266
Query 150 CCTCCTGATACTCTCTATGAAGGAGGATTCTT-TAACGCTATTATGACATTTCCGCAAAA 208
||||||||||||||||||||||||||||| || || || |||||| |||| || |||||
Sbjct 267 CCTCCTGATACTCTCTATGAAGGAGGATTTTTCTAT-GCCATTATGTCATTCCCACAAAA 325
Query 209 CTATCCGAATAGCCCGCCAACCGTGAGGTTTACTTCGGATATGTGGCATCCTAACGTTTA 268
|||||| |||||||| || || ||| |||||||||| ||||| |||||||||||||||||
Sbjct 326 CTATCCTAATAGCCCACCTACGGTGCGGTTTACTTCAGATATTTGGCATCCTAACGTTTA 385
Query 269 TTCTGATGGTCGTGTTTGCATATCTATTCTTCATCCTCCCGGTGATGATCCTAGCGGTTA 328
| | ||||| || ||||| ||||||||||| |||||||| ||||||||||| || || ||
Sbjct 386 TCCCGATGGCCGCGTTTGTATATCTATTCTACATCCTCCTGGTGATGATCCAAGTGGATA 445
Query 329 TGAGCTTGCAAGCGAGCGCTGGACTCCTGTTCATACTGTTGAAAGTATTATGTTGAGTAT 388
|||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||||||||
Sbjct 446 TGAGCTTGCAAGTGAGCGTTGGACGCCTGTTCACACAGTTGAGAGTATCATGTTGAGTAT 505
Query 389 CATATCGATGCTTTCTGGTCCCAATGATGAGTCTCCAGCAAATGTTGAAGCTGCCAAAGA 448
||||| ||||| ||||||||||| || || ||||||||||| ||||| ||||| |||||
Sbjct 506 TATATCAATGCTCTCTGGTCCCAACGACGAATCTCCAGCAAACGTTGAGGCTGCTAAAGA 565
Query 449 ATGGCGAGAGAAGAGAGACGAGTTCAAGAAGAAAGTGAGCCGCTGTGTCAGAAAGTCTCA 508
|||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 566 ATGGAGAGAGAAGAGAGATGAGTTCAAGAAGAAAGTGAGCCGTTGTGTCAGAAAGTCTCA 625
Query 509 AGAAATGTTGTGAACAA 525
||||||||| ||| |||
Sbjct 626 AGAAATGTTTTGATCAA 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25971053999
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5