BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950672 Length=542 Score E Sequences producing significant alignments: (Bits) Value AT5G59300.1 | Symbols: UBC7, ATUBC7 | ubiquitin carrier protein... 907 0.0 AT3G46460.1 | Symbols: UBC13 | ubiquitin-conjugating enzyme 13 ... 595 1e-169 > AT5G59300.1 | Symbols: UBC7, ATUBC7 | ubiquitin carrier protein 7 | chr5:23919597-23921304 REVERSE LENGTH=883 Length=883 Score = 907 bits (491), Expect = 0.0 Identities = 525/542 (97%), Gaps = 0/542 (0%) Strand=Plus/Plus Query 1 TTTCTCTATCATCATCATCCATGGCTTCGCAAGCTAGCCTTCTCCTTCAGAAACAACTTA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 92 TTTCTCTATCATCATCATCCATGGCTTCGCAAGCTAGCCTTCTCCTTCAGAAACAACTCA 151 Query 61 AAGATCTCTGTAAGCATCCTGTTGATGGATTCTCTGCTGGTCTCGTTGATGATAAGAATA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 152 AAGATCTCTGTAAGCATCCTGTTGATGGATTCTCTGCTGGTCTCGTTGATGAGAAGAATA 211 Query 121 TATTCGAATGGAGCGTTACCATTATCGGACCTCCTGATACTCTCTATGAAGGAGGATTCT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 212 TATTCGAATGGAGCGTTACCATTATCGGACCTCCTGATACTCTCTATGAAGGAGGATTCT 271 Query 181 TTAACGCTATTATGACATTTCCGCAAAACTATCCGAATAGCCCGCCAACCGTGAGGTTTA 240 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 272 TTAACGCGATTATGACATTTCCGCAAAACTATCCGAATAGTCCGCCAACCGTGAGGTTTA 331 Query 241 CTTCGGATATGTGGCATCCTAACGTTTATTCTGATGGTCGTGTTTGCATATCTATTCTTC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 332 CTTCGGATATGTGGCATCCTAACGTTTATTCTGATGGTCGTGTTTGCATATCTATTCTTC 391 Query 301 ATCCTCCCGGTGATGATCCTAGCGGTTATGAGCTTGCAAGCGAGCGCTGGACTCCTGTTC 360 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 392 ATCCTCCCGGTGATGATCCTAGCGGTTATGAGCTTGCAAGCGAGCGTTGGACTCCTGTTC 451 Query 361 ATACTGTTGAAAGTATTATGTTGAGTATCATATCGATGCTTTCTGGTCCCAATGATGAGT 420 |||| ||||| ||||||||||||||||||||||| |||||||||||||| || ||||||| Sbjct 452 ATACAGTTGAGAGTATTATGTTGAGTATCATATCAATGCTTTCTGGTCCTAACGATGAGT 511 Query 421 CTCCAGCAAATGTTGAAGCTGCCAAAGAATGGCGAGAGAAGAGAGACGAGTTCAAGAAGA 480 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 512 CTCCAGCAAATGTTGAAGCTGCCAAAGAATGGCGAGATAAGAGAGATGAGTTCAAGAAGA 571 Query 481 AAGTGAGCCGCTGTGTCAGAAAGTCTCAAGAAATGTTGTGAACAACTTCCAACTTCACAC 540 |||||||||| |||||||||||||||||||||||||| ||| |||| || |||||||||| Sbjct 572 AAGTGAGCCGTTGTGTCAGAAAGTCTCAAGAAATGTTTTGATCAACGTCAAACTTCACAC 631 Query 541 CT 542 || Sbjct 632 CT 633 > AT3G46460.1 | Symbols: UBC13 | ubiquitin-conjugating enzyme 13 | chr3:17095878-17097452 REVERSE LENGTH=880 Length=880 Score = 595 bits (322), Expect = 1e-169 Identities = 439/497 (88%), Gaps = 2/497 (0%) Strand=Plus/Plus Query 30 CAAGCTAGCCTTCTCCTTCAGAAACAACTTAAAGATCTCTGTAAGCATCCTGTTGATGGA 89 |||||| | ||||| ||||||||||| ||||||||||| |||||||||||||| |||||| Sbjct 147 CAAGCTTGTCTTCTTCTTCAGAAACAGCTTAAAGATCTTTGTAAGCATCCTGTAGATGGA 206 Query 90 TTCTCTGCTGGTCTCGTTGATGATAAGAATATATTCGAATGGAGCGTTACCATTATCGGA 149 |||||||||||| | |||||||| ||||||||||||||||||||||| || ||||| ||| Sbjct 207 TTCTCTGCTGGTTTAGTTGATGAGAAGAATATATTCGAATGGAGCGTAACTATTATTGGA 266 Query 150 CCTCCTGATACTCTCTATGAAGGAGGATTCTT-TAACGCTATTATGACATTTCCGCAAAA 208 ||||||||||||||||||||||||||||| || || || |||||| |||| || ||||| Sbjct 267 CCTCCTGATACTCTCTATGAAGGAGGATTTTTCTAT-GCCATTATGTCATTCCCACAAAA 325 Query 209 CTATCCGAATAGCCCGCCAACCGTGAGGTTTACTTCGGATATGTGGCATCCTAACGTTTA 268 |||||| |||||||| || || ||| |||||||||| ||||| ||||||||||||||||| Sbjct 326 CTATCCTAATAGCCCACCTACGGTGCGGTTTACTTCAGATATTTGGCATCCTAACGTTTA 385 Query 269 TTCTGATGGTCGTGTTTGCATATCTATTCTTCATCCTCCCGGTGATGATCCTAGCGGTTA 328 | | ||||| || ||||| ||||||||||| |||||||| ||||||||||| || || || Sbjct 386 TCCCGATGGCCGCGTTTGTATATCTATTCTACATCCTCCTGGTGATGATCCAAGTGGATA 445 Query 329 TGAGCTTGCAAGCGAGCGCTGGACTCCTGTTCATACTGTTGAAAGTATTATGTTGAGTAT 388 |||||||||||| ||||| ||||| |||||||| || ||||| ||||| ||||||||||| Sbjct 446 TGAGCTTGCAAGTGAGCGTTGGACGCCTGTTCACACAGTTGAGAGTATCATGTTGAGTAT 505 Query 389 CATATCGATGCTTTCTGGTCCCAATGATGAGTCTCCAGCAAATGTTGAAGCTGCCAAAGA 448 ||||| ||||| ||||||||||| || || ||||||||||| ||||| ||||| ||||| Sbjct 506 TATATCAATGCTCTCTGGTCCCAACGACGAATCTCCAGCAAACGTTGAGGCTGCTAAAGA 565 Query 449 ATGGCGAGAGAAGAGAGACGAGTTCAAGAAGAAAGTGAGCCGCTGTGTCAGAAAGTCTCA 508 |||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 566 ATGGAGAGAGAAGAGAGATGAGTTCAAGAAGAAAGTGAGCCGTTGTGTCAGAAAGTCTCA 625 Query 509 AGAAATGTTGTGAACAA 525 ||||||||| ||| ||| Sbjct 626 AGAAATGTTTTGATCAA 642 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25971053999 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5