BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950673

Length=271
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G59305.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   379    6e-105


> AT5G59305.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant 
structures; EXPRESSED DURING: F mature embryo stage, petal differentiation 
and expansion stage, E expanded cotyledon stage, 
D bilateral stage; Has 30201 Blast hits to 17322 proteins 
in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; 
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes 
- 2996 (source: NCBI BLink). | chr5:23923201-23923910 FORWARD 
LENGTH=493
Length=493

 Score =  379 bits (205),  Expect = 6e-105
 Identities = 242/260 (93%), Gaps = 2/260 (1%)
 Strand=Plus/Plus

Query  1    TAATTCTCTACCTAAGAAATATGAGAAGACATGATATCATCATCAAGCTTCTCCTTCTCA  60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  12   TAATTCTCTACATAAGAAATATGAGAAGACATGATATCATCATCAAGCTTCTCCTTCTCA  71

Query  61   TCTG-CTTCTTTCTCAGCAGAAACATGACTCGGGAATGCCGAGAAGTCCATTTCAAGATT  119
            | || |||||| |||||||||  | ||||||||||||| | |||||||||||||||||||
Sbjct  72   TGTGTCTTCTT-CTCAGCAGATTCGTGACTCGGGAATGTCAAGAAGTCCATTTCAAGATT  130

Query  120  GGACCTGCAAAGATCATCGCAAAACCGAATTACGAAAGAGTGATGCCAACTTGGGTCGAA  179
            |||||||||||||||||||||||||||||  ||| ||||||||||||||| |||| ||||
Sbjct  131  GGACCTGCAAAGATCATCGCAAAACCGAACAACGCAAGAGTGATGCCAACATGGGGCGAA  190

Query  180  GaaaaaaaGTGGCATAAGCACCCATCCGGACCGAACCCAACAGGAAATCGTCACCCACCG  239
            ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct  191  GAAAAAAAGTGGCATAAGCACCCCTCGGGACCTAACCCAACAGGAAATCGTCACCCACCG  250

Query  240  GTCAAACCCTGAGTCGATAA  259
            ||||||| ||||||||||||
Sbjct  251  GTCAAACACTGAGTCGATAA  270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12416134003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5