BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950681
Length=743
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59380.1 | Symbols: MBD6, ATMBD6 | methyl-CPG-binding domain... 939 0.0
> AT5G59380.1 | Symbols: MBD6, ATMBD6 | methyl-CPG-binding domain
6 | chr5:23952261-23953707 FORWARD LENGTH=960
Length=960
Score = 939 bits (508), Expect = 0.0
Identities = 668/740 (90%), Gaps = 32/740 (4%)
Strand=Plus/Plus
Query 8 AATCCCTAATTCGTATGTCAGATTCTGTGTCCGGCGATTTTCCTCCCGATCCACTTCTCG 67
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 47 AATCCCTAATTCGTATGTCAGATTCTGTGGCCGGCGATTTCCCTCCCGATCCACTTCTCG 106
Query 68 CCTCCGGAGCCTTCATCTCCTCCGCCGGTGACGGAACCCTAGACAGTAGTTCGAAACGGC 127
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 107 CCTCCGGAGCCTTCATCTCCTCCGCCGGTGACGGAACCCTAGACAGTAGTGCGAAACGAC 166
Query 128 GGCCGATTCAGGGAGGAATCGGAGTTTCTGGTTCGGGAGAGAGCGTACGCATCGGGATGG 187
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 167 GACCGATTCAGGGAGGAATCGGAATTTCTGGTTCGGGAGAGAGCGTACGCATCGGGATGG 226
Query 188 CTAACGGTACCGATCAGGTGAATCCATCGCCGGATAGTTCGAGCCATCAGGCGGAATCGA 247
||||||| || ||||||||| | || | | || || | |||||||||
Sbjct 227 CTAACGGCACTGATCAGGTG-A---AT---C----A--TC-AG-----A--CGGAATCGA 265
Query 248 AGTCGCGGAAGCGTGCGGCGCCTGGAGATAATTGGTTGCCTCCTGGTTGGAGAGTTGAAG 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 AGTCGCGGAAGCGTGCGGCGCCTGGAGATAATTGGTTGCCTCCTGGTTGGAGAGTTGAAG 325
Query 308 ATAAGATTCGAACCTCCGGTGCCACAGCTGGCTCGGTGGATAAGTACTATTACGAACCAA 367
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 326 ATAAGATTCGAACTTCCGGTGCCACAGCTGGTTCGGTGGATAAGTACTATTACGAACCAA 385
Query 368 ATACAGGGA-GAAAGTTTCGGTCCAGGACCGAGGTACTGTACTACTTGGAACATGGAACT 426
||||||| | | ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 386 ATACAGG-ACGTAAGTTTCGGTCCAGGACTGAGGTGCTGTACTACTTGGAACATGGAACT 444
Query 427 TCTAAAAGAGGAGGCGCCAAGAAAGTTGAGAATAC-TGATTTCCTGTC-AGATCATTTTG 484
||||||||||| | ||||||||| ||||||||| | ||||| || ||| |||||||
Sbjct 445 TCTAAAAGAGG---CACCAAGAAAGCTGAGAATACAT-ATTTCAA-TCCAGACCATTTTG 499
Query 485 AAGGTCAGGGAAGCAATAGAG-CAAGCAGAAAAGCTAAAGAGCCTCCACCGCCGCCACCA 543
|||| || ||||||||||||| || ||||| |||| || ||||||||| ||||||||
Sbjct 500 AAGGCCAAGGAAGCAATAGAGTCAC-CAGAACCGCTACAGTGCCTCCACCTCCGCCACCG 558
Query 544 CCATTGGACTTTGATTTTAAGAATCCACCAGAGAAGGTAAGCTGGTCTATGGCAAACGCT 603
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 559 CCATTGGACTTTGATTTTAAGAATCCACCAGACAAGGTAAGCTGGTCTATGGCAAACGCA 618
Query 604 GGAGAAGAAGCTTGGGTACCTATTATTGGGGACGTCAAGGTTAAAGACTCAGTGAGACGA 663
|||||||||| |||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 619 GGAGAAGAAGGTTGGATACCTAATATTGGGGACGTCAAGGTTCAAGACTCAGTGAGACGA 678
Query 664 GATTGGAGCACTGCGTTTACCTTTATCACAAACCGAAACCCAAGTAAACTGTCGTCTTAA 723
||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| ||| |
Sbjct 679 GATTGGAGCACTGCGTTTACCTTTATCACAAGCCGAAACCCTAGTAAAGTGTCGGCTTGA 738
Query 724 AGACGATGATGACATGGTGG 743
|||| |||||||| ||||||
Sbjct 739 AGACTATGATGACCTGGTGG 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36068117546
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5