BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950684

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G59410.1 | Symbols:  | Rab5-interacting family protein | chr...   676    0.0  


> AT5G59410.1 | Symbols:  | Rab5-interacting family protein | chr5:23959573-23960878 
REVERSE LENGTH=729
Length=729

 Score =  676 bits (366),  Expect = 0.0
 Identities = 413/435 (95%), Gaps = 5/435 (1%)
 Strand=Plus/Plus

Query  3    ttttttGTTTGAAATCGAGGATGAGAGAATCGAAATCAGCCAAGCTGAATCAGCT---AC  59
            |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||   ||
Sbjct  129  TTTTTTGTTTGAAAGCGAGGATGAAAGAATCGAAATCAGCCAAGCTGAATCAGCTACAAC  188

Query  60   AAGAAGATAATCACCAGAATGTTCACTTGTCTCCATCGAAATTAGCGAAATTGTTCGATC  119
            || |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  189  AACAAGAGAATCACCAGAATGCTCACTTGTCTCCATCGAAATTAGCGAAATTGTTCGATC  248

Query  120  CCGATGCTTCTTGGGACAAGGATCAATTGGGAGATGTGTTGCATTGGATTCGACAAGTCG  179
            |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct  249  CCGATGCTTCTTGGGACAAGGATCAATTAGGAGATGTGTTACATTGGATTCGACAAGTGG  308

Query  180  TGGGATTGATCTGTGGATTGCTATGGGGCTCTATTCCACTTGTTGGAGGCATTTGGATCA  239
            |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  309  TGGGATTGATCTCTGGATTGTTATGGGGCTCTATTCCACTTGTTGGAGGCATTTGGATCA  368

Query  240  TTCTGTTTTTGGCCATATCCTCAGGGATCGTTTACGGTTACTACGCAATGATTCTCAAGG  299
            ||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct  369  TTCTGTTTTTGGCGATATCCTCTGGGATAGTTTATGGTTACTACGCAATGATTCTCAAGG  428

Query  300  TTGATGAAGAAGATTTCGGAGGCCACGCAGCTTTACTCCAAGAGGGTCTCTTCGCATCAC  359
            |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct  429  TTGATGAAGAAGATTTCGGAGGCCACGCAGCTTTACTCCAAGAGGGTCTCTTTGCGTCAC  488

Query  360  TTACTCTCTTTTTGCTCGCATGGATTCTTGTCTATAGCTTGGCACACTTCTGAAAAAC--  417
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct  489  TTACTCTCTTTTTGCTCGCATGGATTCTTGTCTATAGCTTGGCACACTTCTGAAAAAAAA  548

Query  418  GCTGAGCAACATTCT  432
            |||||||||||||||
Sbjct  549  GCTGAGCAACATTCT  563



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20509241592


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5