BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950687
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59440.3 | Symbols: ZEU1 | P-loop containing nucleoside trip... 1290 0.0
> AT5G59440.3 | Symbols: ZEU1 | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:23971231-23972924
FORWARD LENGTH=1177
Length=1177
Score = 1290 bits (698), Expect = 0.0
Identities = 791/836 (95%), Gaps = 6/836 (1%)
Strand=Plus/Plus
Query 3 GTTTTAGCTAATCAGGGCATGAAACGGATCTGCTCGTTTTCAAGTGTTCAACTTTTTTCT 62
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 173 GTTTTAGCTAATAAGGGCATGAAACGGATCTGCTCGGTTTCAAGTGTTCAACTTTTTTCC 232
Query 63 AGAAGTTTCAGAGCTTTAGCATCGCCACGATCTTTGAACTATCCCCTGCAGTCTCTCAAG 122
||||||||||||||||||||||||||||| || ||||||||||||||||||| | |||||
Sbjct 233 AGAAGTTTCAGAGCTTTAGCATCGCCACGTTCCTTGAACTATCCCCTGCAGTGTATCAAG 292
Query 123 CGTTCATCAGTTCGGATGGAGAGTTGCAACTTTTCTTCTGGTGTCAGAACCGAGAGTAGT 182
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 293 CGTTCATCAGTTCGGATGGAGAGTAGCAACTTTTCTTCTGGTGTCAGAACCGAGAGTAGT 352
Query 183 GTAAAGCCAAGAGGAGCATTGATAGTTCTAGAAGGTCTTGATCGCAGCGGGAAATCAACG 242
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 GTGAAGCCAAGAGGAGCATTGATAGTTCTAGAAGGTCTTGATCGCAGCGGGAAATCAACA 412
Query 243 CAGTGTGCTAAGCTACTCTCTTTCTTGGAGGGTTTAGGACATCCGACCGAGCTCTGGAGA 302
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 413 CAGTGTGCTAAGCTACTCTCTTTCTTGAATGGTTTAGGACATCCGACCGAGCTCTGGAGA 472
Query 303 TTCCCCGATAGAGAAACGAGTGTCGGTCAGATGATATCCGCTTACCTCTCTAATAAGTCG 362
|||||||||||||| |||||||||||||||||||||||||| || || ||||||||||||
Sbjct 473 TTCCCCGATAGAGAGACGAGTGTCGGTCAGATGATATCCGCGTATCTTTCTAATAAGTCG 532
Query 363 CAGTTAGATGATCACACAATTCATCTCCTTTTCAGCGCCAATCGTTGGGAGAAAAGGTCA 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CAGTTAGATGATCACACAATTCATCTCCTTTTCAGCGCCAATCGTTGGGAGAAAAGGTCG 592
Query 423 TTGATGGAGGAAAAGCTTAAAACAGGAACTACGCTTATCGTTGATCGTTATTCATATTCT 482
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 593 TTGATGGAGGAAAAGCTAAAAACAGGAACTACGCTTATCGTGGATCGTTATTCGTATTCT 652
Query 483 GGTGTTGCATTCTCATCAGCTAAAGGTCTCAATATCGATTGGTGCAAGGC-CCCGGAAAT 541
|||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||
Sbjct 653 GGTGTTGCATTCTCATCAGCTAAAGGTCTCGATATCGAATGGTGCAAGGCTCCCG-AAAT 711
Query 542 CGGGTTACTGGCTCCAGATTCCGTA-TTGTACCTTGACATTTCACCTGAAAGAGCTGCTG 600
||||||||||||||||||||| ||| || ||||| |||||||||||||||||||||||||
Sbjct 712 CGGGTTACTGGCTCCAGATTCTGTACTT-TACCTGGACATTTCACCTGAAAGAGCTGCTG 770
Query 601 AGAGAGGTGGATATGGAGACGAGAGGTACGAGCGAGTGGAGTTTCAGAAAAAAGTCGCAG 660
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||
Sbjct 771 AGAGAGGTGGATATGGAGATGAGAGGTATGAGCGAGTGGAGTTTCAGAAGAAAGTTGCAG 830
Query 661 ACTTTTATCAAACCCTACGTGATTCTTCATGGAAGATAATCAATGC-AGGTGAAGCCATG 719
|||||||||||||||| | |||||||||||||||||||||||||| || ||| ||||||
Sbjct 831 ACTTTTATCAAACCCTTGGCGATTCTTCATGGAAGATAATCAATGCCAG-TGATGCCATG 889
Query 720 GAGGAAGTAGAGAAGAAGATTCAAGAAGTGGCATTAGATAAAGTCAAAGAGTGTACTAAA 779
|||||||||||||||||||||||| |||||| ||||||| |||||||||| |||||| ||
Sbjct 890 GAGGAAGTAGAGAAGAAGATTCAACAAGTGGTATTAGATCAAGTCAAAGAATGTACTGAA 949
Query 780 GGAAAGCCTCTGTCACTCCTATGGTCGTCATAAAACGTTTTCGAGTCATAGCACTT 835
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 950 GGAAAGCCTCTGTCTCTCCTATGGTCGTCATAGAACGTTTTCGAGTCATAGCACTT 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40689659070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5